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Domain assignment for ENSCPOP00000004934 from Cavia porcellus 69_3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000004934
Domain Number 1 Region: 89-122
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000072
Family LDL receptor-like module 0.0038
Further Details:      
 
Domain Number 2 Region: 172-213
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000681
Family LDL receptor-like module 0.0037
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000004934
Domain Number - Region: 136-165
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000144
Family LDL receptor-like module 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000004934   Gene: ENSCPOG00000005479   Transcript: ENSCPOT00000005538
Sequence length 215
Comment pep:novel scaffold:cavPor3:scaffold_88:6007830:6014885:1 gene:ENSCPOG00000005479 transcript:ENSCPOT00000005538 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
GIERKSPFFAWGFWFVGQAGADRNLLCFWQQQPLPGGHGPCCSRRGACLSALLLLLLAML
AALVALVSSLGLPSRTPGAQVCVTPTNRTGFLCHDQRSCIPASGVCDGLRTCPHGEDEDE
SLCRDVPRSLPSFLVARCGDPASWIYSDQKCDGTNNCGDCSDELSPVTECPPCGPGWWRC
PSTFFKYCDCVPRTLCQDGTQHCTDWSDEYSCLRP
Download sequence
Identical sequences 10141.ENSCPOP00000017371 ENSCPOP00000004934 ENSCPOP00000017371

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