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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000007161

Domain assignment for ENSCPOP00000007161 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000007161
Domain Number 1 Region: 3993-4231
Classification Level Classification E-value
Superfamily Plakin repeat 3.66e-88
Family Plakin repeat 0.0000000203
Further Details:      
 
Domain Number 2 Region: 3414-3653
Classification Level Classification E-value
Superfamily Plakin repeat 6.28e-87
Family Plakin repeat 0.0000000527
Further Details:      
 
Domain Number 3 Region: 178-406
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.6e-85
Family Calponin-homology domain, CH-domain 0.000000629
Further Details:      
 
Domain Number 4 Region: 2754-2995
Classification Level Classification E-value
Superfamily Plakin repeat 1.31e-84
Family Plakin repeat 0.0000000717
Further Details:      
 
Domain Number 5 Region: 3083-3322
Classification Level Classification E-value
Superfamily Plakin repeat 4.71e-78
Family Plakin repeat 0.000000418
Further Details:      
 
Domain Number 6 Region: 3751-3988
Classification Level Classification E-value
Superfamily Plakin repeat 1.31e-76
Family Plakin repeat 0.000000902
Further Details:      
 
Domain Number 7 Region: 4304-4345,4380-4574
Classification Level Classification E-value
Superfamily Plakin repeat 4.36e-69
Family Plakin repeat 0.000000272
Further Details:      
 
Domain Number 8 Region: 422-538
Classification Level Classification E-value
Superfamily Spectrin repeat 1.76e-23
Family Spectrin repeat 0.004
Further Details:      
 
Domain Number 9 Region: 1295-1480
Classification Level Classification E-value
Superfamily Spectrin repeat 1.27e-20
Family Spectrin repeat 0.0051
Further Details:      
 
Domain Number 10 Region: 762-864
Classification Level Classification E-value
Superfamily Spectrin repeat 4.8e-17
Family Spectrin repeat 0.0046
Further Details:      
 
Domain Number 11 Region: 4251-4299
Classification Level Classification E-value
Superfamily Plakin repeat 0.000000000131
Family Plakin repeat 0.0093
Further Details:      
 
Domain Number 12 Region: 669-761
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000000000196
Family Spectrin repeat 0.0056
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000007161
Domain Number - Region: 869-941
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000121
Family Spectrin repeat 0.011
Further Details:      
 
Domain Number - Region: 1185-1295
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000298
Family Spectrin repeat 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000007161   Gene: ENSCPOG00000007957   Transcript: ENSCPOT00000008032
Sequence length 4636
Comment pep:known scaffold:cavPor3:scaffold_95:3028596:3062909:-1 gene:ENSCPOG00000007957 transcript:ENSCPOT00000008032 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MVAGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVIRAMASLRARGL
VRETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTSHVQAVQ
GPVGCPPKRAPLLAEDPVREDQRIYRRKEPEEGALETPVVAATSTGTLATPIPEPTPTTD
ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGENLPREKG
RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSG
QSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQ
TNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVR
ANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKE
ADKNRSKSIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKLLRSEFERLEC
LQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLASGKTPQRAGEVERDLDKADGMIRLLF
NDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVAAPVTQVTLQSTQRRPD
LEDSTLRYLQDLLAWVEENQRRIDNAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERAR
SDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRALESLHGFVAAATKELMWLNEKE
EEEVGFDWSDRNTNMAAKKESYSALMRELELKEKKIKEIQNTGDRLLREDHPARPTVESF
QAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSIT
VTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAYPLRGHVPLQAVCDYK
QVEVTMHKGDQCQLVGPAQPSYWKVLSSSGEASVPSVCFLVPPPNQEAQEAITRLEAQHQ
SLVTLWHQLHVDMKSLLAWQSLNRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFL
RDSQDAGGFGPEDRLAAEREYNSCSRHYQQLLQNLEQGEQEESRCQRCISELKDIRLQLE
ACETRTVHRLRLPLDKEPAKECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPS
SAAPILRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEQLKEVQA
VPATLPELEATKASLKKLRAQAEAQQPMFNALKDELRGAQEVGERLQQRHGERDVEVERW
RERVTQLLERWQAVLAQTDIRQRELEQLGRQLRYYRESADPLNTWLQDARRRQEQIQAVP
MANSRAVREQLQQEKALLEEIEQHGEKVEECQKFAKQYINAIKDYELHLVTYKAQLEPVA
SPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAE
ERERLAEVEAALEKQRQLAEAHAQAKVQAELEAQELQRRMQEEVARREEAAVDAQQQKRS
IQEELQHLRQSSEAEIQAKTQQVEAAERNRLRIEEEIRVIRLQLETTERQRGGAEGELQA
LRARAEEAEAQKRQAQEEAERLRRQVQEESQRKRQAEAELALRVKAEAEAAREKQRALQS
LEELRLQAEEAERRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERTLQ
EEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSL
AQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIR
LRAETEQGEQQRQLLEEELARLQREAAEATQKRRELEAELAKVRAEMEVLLASKARAEEE
SRSTSEKSKQRLEAEASRFRELAEEAARLRAERVLAEKLAAISEATRLKTEAEIVLKEKE
AENERLRRLAEDEAFQRRKLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQR
RQVEEEILALKVSFEKATAGKAELELELGRIRSNAEDVLRSKEQAELEAARQRQLAAEEE
QRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQ
EAAQKRLQAEEKAHAFVVQQREQELQQTLQQEQSMLERLRGEAEAARRAAEEAEAARENA
EREATQSRRQVEEAERLKQLAEAAEKLRKEAEHEAARRAQAEQAALKQKQAADAEIEKHK
KFSEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELF
SVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAA
RLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKK
QMAQQLEQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAE
EIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQL
KSEEMQTVQQEQMLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQQLR
EEQRRQQEQMEQEKQQLVASMEEARRRQREAEEGVRRKQEELQCLEQQRQQQEKLLAEEN
QRLRERLQRLEEEHRAALAHSEEIAALQAAAVKALPNGRDTPDGPAVEVEPAHTFQGLRQ
GVPAQQLQEAGILSIEELQRLEQGHTTVAELARREDIHQYLQGRSSIAGLLLKPTNEKLS
VYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAE
RAVTGYKDPYTGEQISLFQAMQKDLIVRDHGIRLLEAQIATGGIIDPVHSHRLPVNVAYQ
RGYFDETMNRVLSDPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLYLLPLTDKAAKG
GELVYTDSEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRIT
VEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLESRVIDHDLYQQLQRGKRSVREVT
EVEAVRRALRGTNVIAGVWLEEAGQKLSIYEALKKGLLQPDVAVALLEAQAGTGHMIDPG
TSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGL
RLLDAQLSTGGIIDPSKSHRVPLDVAYSRGYLDEETNRALLTPKDDAKVYLDPSSCEPVT
YSQLQQRCRPDQLTGLSLLPLSEKAIRARQEEVYSELQARETFEKATVEVPVGSFKGRMV
TVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETKRQERLSFSGLRAP
VPASELLAAKVLSKDQFEQLKDGRTSVKDLSEVSSVRTLLQGSGCLAGIYLEDSKEKVSI
YEAMRRGLLRHGTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEK
AVTGYKDPYSGTTISLFQAMKKGLVLREHGIRLLEAQIATGGIIDPVHSHRLPVEVAYQR
GYFDEEMNRILADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLKEAEKPEV
VETTQVYTEEETRRAFEETQIDIPGGGSHGGSTMSLWEVMQSDLIPEEQRTRLMADFQAG
RVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLESYNLLREGTK
SLREVLEAESAWHYLYGTGSVAGVYVPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATG
FLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQTISLFQAMKKELI
PAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTYDQLSEPSEVRSYVDPST
DERLSYTQLLRRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQL
QEGLTSIEEVTKNLQKFLEGTSCIAGVFVDSTKERLSVYQAMKKGIIRPGTAFELLEAQA
ATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYTGKLISLFQAMKK
GLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFF
DPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKE
MSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAIAK
NYIDRSALDQYRAGTLSITEFADMLSGNASGFRSRSSSVGSSSSYPISPAVSRTQLTSWS
DPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFP
VTDAVNKGLVDKIMVDRINLAQKAFSGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQ
YLTGGLIEPDMPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALD
RSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGRGSFDATGSGFSMTFSSSSYSSSGYGRRY
ASGPSASMGGPESAVA
Download sequence
Identical sequences ENSCPOP00000007161 ENSCPOP00000007161 10141.ENSCPOP00000007161

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.