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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000011528

Domain assignment for ENSCPOP00000011528 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000011528
Domain Number 1 Region: 1452-1623
Classification Level Classification E-value
Superfamily Fibronectin type III 4.34e-27
Family Fibronectin type III 0.0000153
Further Details:      
 
Domain Number 2 Region: 1907-2074
Classification Level Classification E-value
Superfamily Fibronectin type III 1.53e-26
Family Fibronectin type III 0.0000106
Further Details:      
 
Domain Number 3 Region: 909-1077
Classification Level Classification E-value
Superfamily Fibronectin type III 5.66e-26
Family Fibronectin type III 0.0005
Further Details:      
 
Domain Number 4 Region: 1635-1798
Classification Level Classification E-value
Superfamily Fibronectin type III 4.38e-24
Family Fibronectin type III 0.0000144
Further Details:      
 
Domain Number 5 Region: 1266-1439
Classification Level Classification E-value
Superfamily Fibronectin type III 2.18e-22
Family Fibronectin type III 0.00000923
Further Details:      
 
Domain Number 6 Region: 725-892
Classification Level Classification E-value
Superfamily Fibronectin type III 3.26e-22
Family Fibronectin type III 0.00082
Further Details:      
 
Domain Number 7 Region: 410-465
Classification Level Classification E-value
Superfamily Kringle-like 9.42e-21
Family Fibronectin type II module 0.0000458
Further Details:      
 
Domain Number 8 Region: 349-404
Classification Level Classification E-value
Superfamily Kringle-like 1.23e-20
Family Fibronectin type II module 0.0000781
Further Details:      
 
Domain Number 9 Region: 1812-1902
Classification Level Classification E-value
Superfamily Fibronectin type III 4.55e-19
Family Fibronectin type III 0.00000465
Further Details:      
 
Domain Number 10 Region: 1174-1263
Classification Level Classification E-value
Superfamily Fibronectin type III 7e-17
Family Fibronectin type III 0.00000315
Further Details:      
 
Domain Number 11 Region: 2341-2384
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000017
Family Fibronectin type I module 0.0016
Further Details:      
 
Domain Number 12 Region: 559-605
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000000209
Family Fibronectin type I module 0.0019
Further Details:      
 
Domain Number 13 Region: 517-561
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000034
Family Fibronectin type I module 0.0047
Further Details:      
 
Domain Number 14 Region: 231-274
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000127
Family Fibronectin type I module 0.00011
Further Details:      
 
Domain Number 15 Region: 474-513
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000017
Family Fibronectin type I module 0.0019
Further Details:      
 
Domain Number 16 Region: 620-699
Classification Level Classification E-value
Superfamily Fibronectin type III 0.000000000000349
Family Fibronectin type III 0.00000641
Further Details:      
 
Domain Number 17 Region: 94-139
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000389
Family Fibronectin type I module 0.0000656
Further Details:      
 
Domain Number 18 Region: 185-228
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000628
Family Fibronectin type I module 0.00012
Further Details:      
 
Domain Number 19 Region: 2296-2339
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000703
Family Fibronectin type I module 0.0042
Further Details:      
 
Domain Number 20 Region: 50-91
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000249
Family Fibronectin type I module 0.00017
Further Details:      
 
Domain Number 21 Region: 140-183
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000807
Family Fibronectin type I module 0.00022
Further Details:      
 
Domain Number 22 Region: 2384-2425
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000366
Family Fibronectin type I module 0.0026
Further Details:      
 
Domain Number 23 Region: 308-346
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000012
Family Fibronectin type I module 0.0003
Further Details:      
 
Domain Number 24 Region: 2210-2274
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000177
Family Fibronectin type III 0.0032
Further Details:      
 
Domain Number 25 Region: 1094-1181
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000187
Family Fibronectin type III 0.0017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000011528   Gene: ENSCPOG00000012808   Transcript: ENSCPOT00000012933
Sequence length 2478
Comment pep:known scaffold:cavPor3:scaffold_13:47625770:47686396:-1 gene:ENSCPOG00000012808 transcript:ENSCPOT00000012933 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MLRGPRPGLLLLLAALCLGTAVPPVGSSKSKRQTQQIVQPQSPVAVSQSKPGCYDNGKHY
QINQQWERTYLGNALVCTCYGGSRGFNCESKPEREETCFDKYTGNTYRVGDTYERPKDSM
IWDCTCIGAGRGRISCTIANRCHEGDQSYKIGDTWRRPHESGGYMLECVCLGNGKGEWTC
KPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTS
YRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHASLQTTATGSGGPFTDIRTAIYQPQP
HPQPAPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGE
PCVLPFTYNGRTFYSCTSEGRQDGHLWCSTTSNYEQDKKYSFCTDHAVLVQTRGGNSNGA
LCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMAAHEEICTTNEGVMY
RIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDNITYNVNDTFHKRHEEG
HMLNCTCFGQGRGRWKCDPIDQCQDSESRTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWH
CQPLQTYAGSSGPVQVIITETPSQPNSHPIQWNAPEPSHITQYVLRWRPKTSTGRWKDAT
IPGHLNSYTIKGLTPGVVYEGQLISYQQYGHREVTRFDFTTSASTPVTSNTVTGESTVPP
PVVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPD
LLPGRKYIVNVYQISEEGKQSLILSTSQTTAPDAPPNPTVDRVDDTSIVVSWSRPQAPIT
GYRIVYSPSVEGSSTELNLPETADSVTLSDLQPGIQYNITIYAVEENQESAPIFIQQETT
GVPRSDKVPPPRDLQFVEVTDVKVTIMWTPPDSAVTGYRVEVLPVNLPGEHGQRLPVNRN
TFAEVTGLSPGVTYFFKVFAVNHGRESKPLTAQQTTKLDAPTNLQFTNETDTSVLVVWTP
PRAQVTGYRLTVGLTRGDQPKQYSVGPSASRYPLRNLQPGSEYTVSLVAVKGNQQSPKVT
GVFTTLQPGTSIPFYNTEVTETTIVITWTPVPRIGFKLGVRPSQGGEAPREVTSDSGSIV
VSGLTPGVEYVYSIQVLRDGQERDAPIVNTVVTPLSPPTNLHLETNPDTGVLTVSWERST
TPDITGYRITTTPTNGQQGYSLEEVVHADQSSCTFENLSPGVEYNVSVYTVKDNKESVPV
SDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSS
VGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA
PPPSIELTNFLLRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTDYLVSVSSVYEQHESI
PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHLSGRPREDRVPP
SRNSITLTNLLPGTEYVVSIVAVNGREESPILIGQQSTISDVPRDLEVVASTPNSVMIKW
DAPGVTVRYYRITYGETGGNSPVQEFTVPGTKNTATISNLKPGADYTITLYAVTGRGDSP
ASSKPVSIDYRTEIDKPSQMQVTDVQDNSISVRWLPSKSPVTGYRVTTTPKNGVGPSKTK
NAGPDQTEMTIEGLQPTVEYVVSVYAQNQNGESQPLVKTAVTNIDRPKGLAFTDVDVDSI
KIAWESPQGQVTRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHGD
MESKPLIGTQCTAIPAPTDLRFTQVTPTSLSAEWTAPNVRLTGYRVRVTPKEKTGPMKEI
NLSPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATET
TITISWRTKTETITGFQVDAVPASGQTPVQRTISPDVRSYTITGLQPGTDYKIYLYTLNS
NARSSPVVIDASTAIDAPSNLRFLTTTPNSLLVSWQPPRARITGYIIKYEKPGSTPREVL
PRPRPGVTEATITGLEPGTEYIIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNHHGP
EILDVPSTVHQTPFVTNPGYATGNGIQLPGTSLQQPSVGQQMIFEEHGFRRTTPPTAATP
VRHRPRPYPPNVDEEIQIGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQE
SSEYIISCHPVGVDEDLLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQKRHKVQEEVV
TVGNSVNEGLNQPTDDSCFDPYTVSHYAIGDEWERLSESGFKLTCQCLGFGSGHFRCDSS
KWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKMYHVGEQW
QKEYLGAICTCSCFGGQRGWRCDTCRRPGAEPGPEGSAGHAYGPYTQRYHQRTNTNVNCP
IECFMPLDVQADREDSRE
Download sequence
Identical sequences H0VMA2
10141.ENSCPOP00000011528 ENSCPOP00000011528 ENSCPOP00000011528 XP_003474253.1.53824

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.