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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000011890

Domain assignment for ENSCPOP00000011890 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000011890
Domain Number 1 Region: 122-271
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 7.06e-42
Family Mannose 6-phosphate receptor domain 0.000000128
Further Details:      
 
Domain Number 2 Region: 275-419
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.83e-41
Family Mannose 6-phosphate receptor domain 0.000000396
Further Details:      
 
Domain Number 3 Region: 579-714
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.09e-40
Family Mannose 6-phosphate receptor domain 0.00034
Further Details:      
 
Domain Number 4 Region: 1466-1597
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 3.53e-36
Family Mannose 6-phosphate receptor domain 0.000000242
Further Details:      
 
Domain Number 5 Region: 711-876
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 7.33e-35
Family Mannose 6-phosphate receptor domain 0.0016
Further Details:      
 
Domain Number 6 Region: 1317-1457
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.22e-34
Family Mannose 6-phosphate receptor domain 0.00068
Further Details:      
 
Domain Number 7 Region: 1174-1313
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.96e-32
Family Mannose 6-phosphate receptor domain 0.00013
Further Details:      
 
Domain Number 8 Region: 430-570
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.22e-32
Family Mannose 6-phosphate receptor domain 0.0015
Further Details:      
 
Domain Number 9 Region: 1020-1169
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.35e-32
Family Mannose 6-phosphate receptor domain 0.00084
Further Details:      
 
Domain Number 10 Region: 1937-2076
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.35e-30
Family Mannose 6-phosphate receptor domain 0.0014
Further Details:      
 
Domain Number 11 Region: 1-119
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.83e-29
Family Mannose 6-phosphate receptor domain 0.00000131
Further Details:      
 
Domain Number 12 Region: 1602-1747
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 4.84e-29
Family Mannose 6-phosphate receptor domain 0.001
Further Details:      
 
Domain Number 13 Region: 2083-2230
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.7e-28
Family Mannose 6-phosphate receptor domain 0.001
Further Details:      
 
Domain Number 14 Region: 1754-1847,1896-1939
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 9.68e-23
Family Mannose 6-phosphate receptor domain 0.0036
Further Details:      
 
Domain Number 15 Region: 886-1028
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 6.02e-20
Family Mannose 6-phosphate receptor domain 0.0033
Further Details:      
 
Domain Number 16 Region: 1846-1894
Classification Level Classification E-value
Superfamily Kringle-like 7.14e-16
Family Fibronectin type II module 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000011890   Gene: ENSCPOG00000013207   Transcript: ENSCPOT00000013334
Sequence length 2439
Comment pep:known scaffold:cavPor3:scaffold_60:10047971:10136270:-1 gene:ENSCPOG00000013207 transcript:ENSCPOT00000013334 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
LSSYTWEAVDTKSNKLYKISVCGNVDESHCGTSSAVCMHDLKTNSFQSVGDSLLKNAARS
LLEFNTTTNCGQQPAEHKVQSSITFLCGKTLGTPEFVTSTECVHYFEWRTTAACKKDTFK
ANKEVPCYVFDAELKKHDLNPLIKVSGGYLVDDSDPDTSLFINVCRDIDSLRDLSPQLRA
CPVGTAACLLRGNQAFDVGQPKEGLKLASKDRLVLTYVKEGVGKPDFCDGHSPAVTITFV
CPSERREGTLPKLTAKSNCRYEVEWITEYACHRDYLESSTCTLSSGQHDIAIDLRPLNML
GGSYTSDGKEYIFYLNVCGEAKSVACNNKKEAAVCQVKKSDNTQVKIAGRPQNQTLRYSD
GDLTLIYFGGEECSSGFQRMSVINFECNETARNGGKGEPVFTGEVDCTYFFTWDTKYACV
KEKEDLLCGVSDGRKRYDLSALARHSESEQNWEAVDGSQTEAEKKHFFINVCHRVLREGK
AINCSEDAAVCAVDKTGSKSLGKFTSSPTKEEGNIQLSYSDGDDCGGNKKIKTIITLICK
PGDLASAPVLRTSGDNGCFYEFEWHTAAACVLSKTEGDNCTVFDSQAGFSFDLSPLTKKN
GAYKVETEKYEFYINVCGSVSMQTCPSDSGACQISKSDRKFWNLGLSNGKLSYYDGMIQL
SYKDGTPYNNEKHTPRSTLITFLCDRDAGVGLPEYQEEDNSTYNFRWYTSYACPEEPLEC
VVTDPSTLEQYDLSSLAKFEGSPGRNWYAMDNLGEHITWKKYYINVCRPLNPVPGCDRYA
SACQMKYENSQGTFTETVAISSLGVAKTGPVVEESGSLLLEYVNGSACTTSDGRVTTYST
RLHLVCSPGSLNTHPVFSLNWDCVVSFLWNTEAACPIQTVTDTDQACSVRDPNSGFMFNL
NPLSNPQGYLVSGIGKTFLLNICGTMSACGTVAGKLASGCEATETQELKNVRAEKPVGFK
KRLQLSTEGFLTLTYTGFPPADKGTAFIIRFICNDDIYPGAIKFLHQDIDSAQGIRNTFF
EFETALACIPSPVDCQVTDSAGNEYDLSALSAVKKPWTAVDTTADRKKRTFYLSVCSPLP
FVTGCHGSAVGSCVVSEESSWNLGVVQISPQAAANGSLSIVYVNGDKCGNQRYSTRIMFE
CAQTSGSPMFQLQNNCEYVFLWRTVEACPVVRAEGDNCQVKDPRHGTLYDLRPLGLSDTI
VSFAEYTYYFRVCGQLSSNVCGIQDRSKIVSACQEKKGEQKFEKVAGLLTQKLTYENGLL
KMNYTGGDTCHRVYQRSTTIFFYCDRSTQKPVFLRETSDCSYLFEWRTQYACPPFNVTEC
SFNDGAGNSFDLSSLSRYSDNWEAVTRTGATEHFLINVCKSLAPQTGSETCHPESAVCLL
DGSKSVNLGRVRDGPQRIDGVTVLTYVDGDLCPDKIRRKSTTIRFSCSESQVNSRPLFIS
AVEDCEYTFSWPTAAACPVQKTVHDDCQVTNPSTGHLFDLSSLSSRAGFTAAYSENGLVY
MSICGENENCAPGMGACFGQTRISVGKASKKLSYEDQVLQLVYEDGSSCPSKSGLRYKSV
ISFVCRPEAGPTSRPVLISLDKQTCTLFFSWHTPLACEQATECTVRNGSSIIDLSPLIHR
TGGYEAYDESEEDTSDTNPDFYINICQPLNPMHGVPCPAGAAVCKIPVTGPPLDIGRVTG
PPRLSAGGTEVYLTLESRTPCLADKQFNYTSLITFHCKRGVSMGTPKLIRTTGCDFVFEW
QTPVVCPDEVKMEGCALTDEQLLYSFNLTSLSKGPFKVTRDSHTYSVGVCTAAAGLDQGG
CKDGGVCLLSGSKGVSFGRLASMQLDYRHEDEAVILSYVNGDICPPETEVGDPCVFPFIF
NGRSYDDCVLEGRTKLWCSKTANYDRDHEWGFCRQSNSHRTSTITFKCDEDVTIGRPEVF
SEVRGCEVAFEWRTKVVCPPEKMECKFIQNHKTYDLRLLSSLTGSWVFMHEGASYFINLC
QRVYKGPLDCSERASICKKSASGQVQVLGLVHTQKLDVLDDKVIVTYSKGYPCGENKTAS
SVIELTCAKTVGKPAFKRFDIDSCTYYFHWDSRAACAVRPQEVQMVNGTLTNPMNGKSFS
LGDIYFKLFSASGDMRTNGDSYMYEIQLSSITSSSIPACFGANICQRKLNDEHFIRKVGT
SERTKYYVQDGDLDVVFASSSKCGKDKTKSVSSTIFFHCDPLVKEGIPEFSHETADCQYL
FSWYTSAVCPLGMGFEESIQSHKGLSERSQAVGAILSLLLVALTGCLLALLLYKKERREV
VINKLTNCCRRSSNVSYKYSKVNKEEEADENETEWLMEEIQMPPPRLVKEGQENGHITTK
SVKAEALTSLHGDDQDSEDEVLTIPEVKVHSSRGARVDNSHPVRNPQQQTHWEREDDKAG
LVPGEKTRKGKPRPGQQKTVTSTKLVSFHDDSDEDLLHI
Download sequence
Identical sequences ENSCPOP00000011890 10141.ENSCPOP00000011890 ENSCPOP00000011890

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.