SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000017609 from Cavia porcellus 69_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000017609
Domain Number 1 Region: 642-739
Classification Level Classification E-value
Superfamily PDZ domain-like 8.02e-29
Family PDZ domain 0.02
Further Details:      
 
Domain Number 2 Region: 889-980
Classification Level Classification E-value
Superfamily PDZ domain-like 1.71e-24
Family PDZ domain 0.0035
Further Details:      
 
Domain Number 3 Region: 423-512
Classification Level Classification E-value
Superfamily PDZ domain-like 2.23e-24
Family PDZ domain 0.021
Further Details:      
 
Domain Number 4 Region: 248-350
Classification Level Classification E-value
Superfamily PDZ domain-like 5.52e-23
Family PDZ domain 0.00019
Further Details:      
 
Domain Number 5 Region: 741-832
Classification Level Classification E-value
Superfamily PDZ domain-like 1.58e-22
Family PDZ domain 0.004
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000017609   Gene: ENSCPOG00000024891   Transcript: ENSCPOT00000022502
Sequence length 1020
Comment pep:novel scaffold:cavPor3:scaffold_2:69451240:69482853:-1 gene:ENSCPOG00000024891 transcript:ENSCPOT00000022502 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
QGFRDEPYLREELVDEPFLDLGKTFRSQQNEINDSPEAWEMQEFLSPALQDLGEEQEMLV
DEEYALYQHRLQALELRPASSLQDATPTPTCQELHLGAQWLSDECPGGAESPDARSLRSV
YSTDVQYMGNPYETPSKMEERFGIDPLSVPSDASGPHGTFDDPEHLGSSGESSLDLGMTI
PGADPGQSRLLDLPTGAQRREHDLPLYQLARPREATQPSEAWPSRHAADARELPEREEGE
GEETPSFSHWGPPRIVEIFREPSVSLGISIVGGQMVIKRLKNGEELKGIFIKQVLEDSPA
GRTNALKTGDKILEVSGVDLQNASHQEAVEAIKNAGNPVVFVVQSLSSIPRVLPSPHNKG
SKVANAPDQDTQEKEEKRRGAAPPPMKLPPPYQDPAVEAEEEEEELHYTCAITREKIRQR
YADLPGELHIIELEKDRQGLGLSLAGNKDRSLMSIFVVGIQPGSPAAVDGRMRVGDELLE
INNQILYGRSHQNASAIIKTAPRRVKLVFIRNEGAVQQMAVPPLPCSSPTSTEDTSSPEP
VSSEDDGGLEASNEPLPESQHSKPEHNSLASTSHMISSGAKLFRSPSENTSERKEQDHSP
EASLASQEDPSAPALPCHATEADITDYGTAPSLVSRQAPLSVDPATCPIIPGQEMIIEIS
KGRSGLGLSIVGGRDTPLEAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRGCSHEEA
ITALRQTPARVQLVVFRDTAQYRDEDSLEVFTVDLHKKAGRGLGLSIVGKRTGNGVFISA
IVKGGAAELDGRLTQGDQILAVNGEDMRSASQETVATILKCAQGLVQLEIGRLRASAWTS
SRKTSRHSQEDPRGAHGSCPTALAPVLAGLQNLVGARRATGPLERSPGADAEPRTVEIIR
EHSDALGISIAGGKGSPLGDVPVFIAMIQANGVAARTRRLKVGDRIVSINGQPLDGRSHA
DAVALLKNAFGRIVLQVVADTNIGAIATQLETMSTGQHPSSPGTDHPSEDAEWQVRTEAP
Download sequence
Identical sequences ENSCPOP00000017609 ENSCPOP00000020231 10141.ENSCPOP00000020231

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]