SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000008545 from Cavia porcellus 69_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000008545
Domain Number 1 Region: 24-148
Classification Level Classification E-value
Superfamily Spermadhesin, CUB domain 6.15e-19
Family Spermadhesin, CUB domain 0.0046
Further Details:      
 
Domain Number 2 Region: 146-182
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000183
Family LDL receptor-like module 0.003
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000008545   Gene: ENSCPOG00000009520   Transcript: ENSCPOT00000009606
Sequence length 388
Comment pep:novel scaffold:cavPor3:scaffold_57:3640022:3677346:1 gene:ENSCPOG00000009520 transcript:ENSCPOT00000009606 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
RGMQNRFNQTKDPDFKDLGVLKPLPACEFEMGGPEGIVESIQILKEGKASASEAVDCKWY
IRAPPRSKIYLRFLDYEMQNSNECKRNFVAVYDGSSSVEDLKAKFCSTVANDVMLRTGLG
VIRMWADEGSRNSRFQMLFTSFQEPPCEGNTFFCHSNMCINNTLVCNGLQNCVYPWDENH
CKEKRKASLLDQLTNTSGTVIGVTSCIVIILIIVSVIVQIKQPRKKYVQRKSDFDQTVFQ
EVFEPPHYELCTLRGTGATADFADVADDFENFHKLRRSSSKCIHDHHCGSQLSSTKGSRS
NLSTRDASILTEMPAQPTKPLIPPMNRRNILVMKHNYSQDAADACDIDEIEEVPTTSHRL
SRHDKAVQRFCLIGSLSKHESEYNTTRV
Download sequence
Identical sequences ENSCPOP00000008545 10141.ENSCPOP00000008545 ENSCPOP00000008545

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]