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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000013835

Domain assignment for ENSCPOP00000013835 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000013835
Domain Number 1 Region: 757-1008
Classification Level Classification E-value
Superfamily YWTD domain 2.35e-45
Family YWTD domain 0.00000851
Further Details:      
 
Domain Number 2 Region: 107-265,428-603,646-682
Classification Level Classification E-value
Superfamily Sialidases 1.22e-30
Family Sialidases (neuraminidases) 0.06
Further Details:      
 
Domain Number 3 Region: 1556-1741
Classification Level Classification E-value
Superfamily Fibronectin type III 8.64e-28
Family Fibronectin type III 0.0018
Further Details:      
 
Domain Number 4 Region: 1931-2104
Classification Level Classification E-value
Superfamily Fibronectin type III 8.88e-17
Family Fibronectin type III 0.0052
Further Details:      
 
Domain Number 5 Region: 1413-1451
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000458
Family LDL receptor-like module 0.00084
Further Details:      
 
Domain Number 6 Region: 1192-1230
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000484
Family LDL receptor-like module 0.00072
Further Details:      
 
Domain Number 7 Region: 1319-1356
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000654
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 8 Region: 1149-1190
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000223
Family LDL receptor-like module 0.00076
Further Details:      
 
Domain Number 9 Region: 1072-1110
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000017
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 10 Region: 1235-1268
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.0018
Further Details:      
 
Domain Number 11 Region: 1367-1400
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000262
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 12 Region: 1467-1504
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000602
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 13 Region: 1507-1546
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000563
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 14 Region: 1113-1152
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000117
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 15 Region: 1746-1830
Classification Level Classification E-value
Superfamily Fibronectin type III 0.000000705
Family Fibronectin type III 0.0054
Further Details:      
 
Domain Number 16 Region: 1272-1307
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000236
Family LDL receptor-like module 0.0023
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000013835
Domain Number - Region: 1837-1926
Classification Level Classification E-value
Superfamily Fibronectin type III 0.0738
Family Fibronectin type III 0.0054
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000013835   Gene: ENSCPOG00000015350   Transcript: ENSCPOT00000015499
Sequence length 2211
Comment pep:known scaffold:cavPor3:scaffold_19:26637168:26782338:-1 gene:ENSCPOG00000015350 transcript:ENSCPOT00000015499 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MATRSSRRESRLPFLFTLLALLPPRALCADWTPRLHGGRAPLPQDRGVLVVQGDPRELRL
WARGDARGASPAEQKPLRTRRSAALQPQPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVAL
ARDSLALARPKSSDVYVSYDYGKSFSKISEKLNFGIGNTSEAVIAQFYHSPADNKRYIFA
DAYAQYLWITFDFCNTIHGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQLWKSDDFGQT
WIMIQEHVKSFSWGIDPYDKPNTIYVERHEPSGYSTVLRSTDFFQSRENQEVILEEVRDF
QLRDKYMFATKVVHLLENHQQSSVQLWVSFGRKPMRAAQFVTRHPINEYYIADASEDQVF
VCVSHSNNRTNLYISEAEGLKFSLSLENVLYYSPGGAGSDTLVRYFANEPFADFHRVEGL
QGVYIATLINGSMNEENMRSVITFDKGGTWEFIQAPAFTEYGEKINCELSQGCSLHLAQR
LSQLLNLQLRRMPILSKESAPGLIIATGSVGKNLASKTNVYISSSAGARWREALPGPHYY
TWGDHGGIIMAIAQGMETNELKYSTNEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIF
GSNKENVHSWLILQVNATDALGVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATC
FNGEDFDRPVVVSNCSCTREDYECDFGFKMSEDLSLEVCVPDPEFSGRPPVPCPVGSTYR
RTRGYRKISGDTCSGGDVEARLEGELVPCPLAEENEFILYAMRKSIHRYDLASGVTEQLP
LSGLRAAVALDFDYERNCLYWSDLALDIIQRLCLNGSTGQEVIISSGLETVEAVAFEPLS
QLLYWVDAGFKKIEVANPDGDFRLTVVNSSVLDRPRALVLVPQEGVMFWTDWGDLNPGIY
RSNMDGSSAHRLVSEDVKWPNGIAVDDQWIYWTDAYLDCIERITFSGQQRSVILDNLPHP
YAIAVFKNEIYWDDWSQLSIFRASKFSGSHMEILASQLTGLMDMKIFYKGKNTGSNACVP
SPCSLLCLPKANNSKSCRCPEGVASSVLPSGDLLCDCPQGYQLKNNTCVKEENTCLRNQY
RCSNGNCINSIWWCDFDNDCGDMSDERNCPTTICDLDTQFRCQESGTCIPLSYKCDLEDD
CGDNSDESHCEMHQCRSDEYNCSSGMCIRSSWVCDGDNDCRDWSDEANCTAIYHTCEASN
FQCRNGHCIPQRWACDGDTDCQDGSDEDPVSCEKKCNGFRCPNGTCIPSSKHCDGLRDCS
DGSDEQHCEPLCTRFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDPAFAGCSQDPEFHR
VCDEFGFQCQNGVCISLIWKCDGMDDCGDYSDEANCENPTEAPNCSRYFQFRCENGHCIP
NRWKCDRENDCGDWSDEKDCGDSHILPSPTPGPSTCLPNYFRCSNGACVMDTWVCDGYRD
CADGSDEEACPSLANVTAPSTPTQVGQCDRFEFQCHQPKKCIPNWKRCDGHQDCQDGQDE
ANCPTHSTLTCMSREFKCEDGEACIVLSERCDGFLDCSDESDEKACSDELTVYKVQNLQW
TADFSGDVTLTWMRPKKMPSTSCVYNVYYRVVGESIWKTLETHSNKTNTVLKVLKPDTTY
QVKVQVQCLSKAHNTNDFVTLRTPEGLPDAPRNLQLSLHREAEGVIIGHWTPPIHAHGLI
REYIVEYSRSGSKVWASQRAVSNATEIKNLLVNALYTVRVAAVTSRGIGNWSDSKSITTI
KGKVIPPPDIHIDSYDENSLSFTLTMDSDIKVNGYVVNLFWAFDAHKQEKRTLSFRGSPL
SHKVDNLTAHTSYEISAWAKTDLGDSPLAFEHVVTRGVRPLAPSLKAKAINQTAVECTWT
GPRNVVYGIFYATSFLDLYRNPKSVTTSLHNKTVIVSKDEQYLFLVRVLVPYQGPSSDYV
VVKMIPDSRLPPRHLHAVHTGKTSAVIKWESPYDSPDQDLFYAIAVKDLIRKTDRSYKVK
SRNSTVEYTISKLEPGGKYHVIVQLGNMSKDSSIKITTVSLSAPDALKIITENDHVLLFW
KSLALKEKHFNESRGYEIHMFDSAMNITAYLGNTTDNFFKISNLKMGHNYTFTVQAQCLF
GSQICGEPAVLLYDELGSGGDAAAVQASRSTDVAAVVVPILFLILLSLGVGFAILYTKHR
RLQNSFTAFANSHYSSRLGSAIFSSGDDLGEDDEDAPMITGFSDDVPMVIA
Download sequence
Identical sequences H0VT55
ENSCPOP00000013835 ENSCPOP00000013835 10141.ENSCPOP00000013835 XP_003472804.1.53824

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.