SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000018274 from Cavia porcellus 69_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000018274
Domain Number 1 Region: 38-128
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.52e-38
Family SCAN domain 0.0000405
Further Details:      
 
Domain Number 2 Region: 351-408
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.41e-24
Family Classic zinc finger, C2H2 0.0028
Further Details:      
 
Domain Number 3 Region: 311-361
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.2e-19
Family Classic zinc finger, C2H2 0.0083
Further Details:      
 
Domain Number 4 Region: 393-445
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.99e-19
Family Classic zinc finger, C2H2 0.0034
Further Details:      
 
Domain Number 5 Region: 197-238
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.00000000000863
Family KRAB domain (Kruppel-associated box) 0.0045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000018274   Gene: ENSCPOG00000000772   Transcript: ENSCPOT00000025973
Sequence length 457
Comment pep:known scaffold:cavPor3:scaffold_4:23111918:23118010:1 gene:ENSCPOG00000000772 transcript:ENSCPOT00000025973 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAAAQEPQDQAPGEGEGLLIVKIEDSSWEQETAQQEDSRDSEACRQRFRQFCYGEVGGPH
EAFSQLWELCCRWLRPELRTKEQILELLVLEQFLTVLPGEIQAQVRGQCPGNGEEAVALV
EDLQKQPVKAWSQDVPSENEEAEAMIQTSQAKGMVGIWSRLLASQRLYSFPSAQLPALLK
EGNTRETTDACFASGVHAPVALGDIPFYFSREEWGSLDPAQRDLFWDIKRENSRNTTPGL
GLQSQSKKVLLEEVVKVLPGQADGEGTVSWNPRDAEAWEKEHQPAVSLGRPVGARRGRPP
ARRRQFRDLAAEKPHSCGQCGKRFRWGSDLARHQRTHTGEKPHKCPECDKSFRSSSDLVR
HQGVHTGEKPFSCNECGKSFSRSTYLADHQRIHTGEKPFGCSDCGKSFSLRSYLLDHRRV
HTGERPFGCGECDKSFKQRAHLIAHQSLHARMAQPVG
Download sequence
Identical sequences ENSCPOP00000000690 10141.ENSCPOP00000000690 ENSCPOP00000018274

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]