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  Home > Genomes > Gasterosteus aculeatus 76_1 > ENSGACP00000023416

Domain assignment for ENSGACP00000023416 from Gasterosteus aculeatus 76_1

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSGACP00000023416
Domain Number 1 Region: 823-860
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000929
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 2 Region: 747-781
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000157
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 3 Region: 902-941
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000654
Family LDL receptor-like module 0.00093
Further Details:      
 
Domain Number 4 Region: 105-142
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000694
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 5 Region: 866-899
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000249
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 6 Region: 327-363
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000497
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 7 Region: 416-452
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000497
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 8 Region: 944-977
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000681
Family LDL receptor-like module 0.0026
Further Details:      
 
Domain Number 9 Region: 669-701
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000759
Family LDL receptor-like module 0.00099
Further Details:      
 
Domain Number 10 Region: 227-263
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000825
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 11 Region: 186-228
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000825
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 12 Region: 543-576
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000089
Family LDL receptor-like module 0.0021
Further Details:      
 
Domain Number 13 Region: 25-62
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000127
Family LDL receptor-like module 0.002
Further Details:      
 
Domain Number 14 Region: 368-401
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000144
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 15 Region: 67-101
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000157
Family LDL receptor-like module 0.0027
Further Details:      
 
Domain Number 16 Region: 285-319
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000017
Family LDL receptor-like module 0.0031
Further Details:      
 
Domain Number 17 Region: 587-625
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000458
Family LDL receptor-like module 0.002
Further Details:      
 
Domain Number 18 Region: 706-740
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000602
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 19 Region: 629-662
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000864
Family LDL receptor-like module 0.002
Further Details:      
 
Domain Number 20 Region: 790-820
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000113
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 21 Region: 504-537
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000249
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 22 Region: 458-490
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000458
Family LDL receptor-like module 0.0033
Further Details:      
 
Domain Number 23 Region: 161-184
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000694
Family LDL receptor-like module 0.0029
Further Details:      
 
Weak hits

Sequence:  ENSGACP00000023416
Domain Number - Region: 1-24
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000903
Family LDL receptor-like module 0.0037
Further Details:      
 
Domain Number - Region: 144-160
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0589
Family LDL receptor-like module 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSGACP00000023416   Gene: ENSGACG00000017714   Transcript: ENSGACT00000023462
Sequence length 983
Comment pep:known_by_projection group:BROADS1:groupXIV:9047902:9058025:1 gene:ENSGACG00000017714 transcript:ENSGACT00000023462 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
CLQLEQLCDGKKDCPEGDDEDLCVATCPSEGKLCEDGTECVFYSHVCDGERDCRDGSDEQ
GCATKPACISPSVLCAGSSVCITPNQLCDGKKDCPDGSDENCVNRCPYRNFRCKDRRSCV
SRSLVCDGISHCHDGSDEVDCMSITPNQLCDGKKDCPDGSECVLFSHVCDGEKDCRDGSD
EANSLKCRMGSRMCRDGTECVLFSHVCDGEKDCRDGSDEEGCGSSVCITPNQLMCRDGTE
CVLFSHVCDGEKDCRDGSDEEGCDAAVSATSGPVVNESPAPTKPACISPSIVCAGSSVCI
TPNQLCDGKQDCPDGSDENCVNRCPKNSKADFRCKNRWSCISRSLVCDGISHCHDGSDEV
DCMRKNSRADFRCKDRRSCVSRSLVCDGISHCHDGSDEVDCPNDAPPAAAQANSLKCRMG
SRMCQDGTECVLFSHVCDGENDCRDGSDEEGCAEKQSARGDHASCCSSVCITPNQLCDGK
KDCPDGSDENCVNRCPYRSELFCLMEGMCQDGTECVLFSHVCDGEKDCRDGSDEEGCGLP
PAAEFRCKDRRSCVSWGLVCDGISHCHDGSDEVDCPSWASPAARANPMKCRVGSKPCDYS
MECVLYSHVCDGERDCMDGSDEQGCDETCKEFQCSHGKMCIPEAEVCDGRSQCRDQSDEV
DCGKPGTSCEHRCADGERCIPKKFLCDGERDCLDGTDELGCATNKCSNDFLCGDRRMCVP
KVDVCDGHAHCADGSDEERCPSAGPAAPNEFRCAHGSKCIPPEQVCDGRNDCQDRSDEMD
CSSQTEGCLRRCDNNTRCVPDTFLCDGERDCADGSDEEECGVVACTFDQYRCLSGTCVSE
ALRCDGYADCADRSDEAHCTRPPRCPTQLRCPNSHECLQKEWLCDGEDDCKDGSDEKNCL
SPPVKCREHQWQCGDGNDCVPLSWRCDGRKDCLNGADEDQCGQTKCPSHLYRCGSGECVD
PLLVCNGFTNCADNSDEGAGCGR
Download sequence
Identical sequences G3Q0M1
69293.ENSGACP00000023416 ENSGACP00000023416 ENSGACP00000023416

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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