SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Selmo1|179234|estExt_Genewise1Plus.C_510265 from Selaginella moellendorffii

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Selmo1|179234|estExt_Genewise1Plus.C_510265
Domain Number 1 Region: 970-1019,1138-1179,1315-1455,1520-1755
Classification Level Classification E-value
Superfamily ARM repeat 0.00000000000000123
Family Leucine-rich repeat variant 0.098
Further Details:      
 
Domain Number 2 Region: 92-125,159-232,315-432,603-640,965-1062
Classification Level Classification E-value
Superfamily ARM repeat 0.00000624
Family HspBP1 domain 0.048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|Selmo1|179234|estExt_Genewise1Plus.C_510265
Sequence length 1780
Sequence
MAKECPDDAAAPPKTSLYNRWLPAIVAERIGEEEGRFHQLALKLKEEWEPGNSASAVRTT
RFIYLIQSFLKALSTVAVEDVQLVANIGLEVLLEGTINLQAQTRWAICLTRIFRKYRKKL
SLSLDWRPFYKIFVNTHFKRQEFYSGLGTNSEHATNFVVLLKCCRYYFSAGSATEIWNEF
RPCFDHPCRTSCLEALGFLGLFIPLKSQHSLSEPYVFTVDWVAECLDLWQRIPSCQFWSS
QWGSLIGRCITSLDMNWEPFMPVIFSHLLNSFRVPVGRSSAHPPINWSIHSFPPGINVSL
SKTAAKSIVRTSSSFRKLVDYLEPYYHPSNGGHWSDSLEHFMTFLVRCFSKRMERECNTQ
KKTRQVLGAVERASFVKEVLRLVERGQYSKSDRLSHACAKAVSNLAYIEPALALNVAVSS
FETAMVSITATHQLELAIKTLALCTRPILLFYQRETASNKENQLTAGPAVRYRDALLGSM
FKTIPGLDANDPLKTLATMQLYCSVLSSVSNLQDPDHNGIFPIDWEKWTFQFLDQLFSLL
LSLEPGSQSSLSTETNTNDGFLVESGSYFYPLLALLFGKLPERIFKLVLVRIKKFLTGNI
LPGAADEMATLCFAAVERDSSTAISMLLEPIMKDLLSTLGETPSTGYCKNGETSDFSSKA
TLSSALEQRATYQLNVLASTIAAGDATILNYKTILKDLIQVAFNAPSCKVNDAGKLLLKF
LIRRLVCYFPVSSWKICVSRLPASDELDIWIGTKDKNEFDSARPSWHIPSADEIMFVEEL
VDFHMHGALSNLQRFPEKGLQKNTGQEKDYLRVTLLRVDAVLQGLGSSLPDFQKVEHSYT
VVGLSGVPIGDSSLRSDIAMILHKACGYLLANKGDESAILKPLISVMNAIVNSGGVENGY
WHQARNDWDAERLNLTEPAANFLTSNDTKCLRRPLWLVHQRAYIQHVWRSAETEYYDYYM
SPTNSLPPALESLSNDLVSISLHRYKAIRSYAAAVLGLLMHRFFFLPQTILPLLVTHLNN
PNATEESTLGACAILKTRTVIRSMMEVRLTSIVICLCVNVFAHHDSTKAQNAINKLFIAF
NWYFGGSPVQVTPNIEDTIMDIKSFATGASSSVHWRYNLMAQGLLLFLTLAPFFESGKKN
LNLVRNGYEHFLGKLTSDLPTVRRLSVRAVLLLLGAESDKMQGHELNGSITIGQQLLSES
FGERVVELLALDHHYTEDDGIHVPQSMSDVGLVYLLPTYMCDWPLTRSWESKSLGVAFSK
ASAKLFEELTRKYGQIVLDILRRPLEDAVSTVDERGKQCAAAEIIGGVIRSEAACVEAAW
DDWLSALLRKALKKTTLECAPEWVACIRYATSGSQGSALRFKVLECLGKLLGSHASSSLA
AKRFNFLTAALLEVQSKDMLSDEVSFQVMLLDEILEYTGHSTAQVRKAIGTLACVLSAGL
RECGHEVPLDGSTSLGRFIQRTEPEARKILNVHENVEGDVSKRDKKAVKDMETVSDIDLS
ASFFTPLVVQVFYFLLACMYSGRFNILSDLVVELVHPLLLLQDTSEKDLTHLARSALRYL
KWQLFPTSHLAELASRLLKAASEDNWRVRVASISFLQPFMYRHSFLLNHSLWQLLWNKVT
ESLCDPQLEVGVREMSSTAAAGMMRGAESSVVQSFREQALATTRSILKSGKPKLPDGLAV
PVVHGAVLALTACILSVPYDIPRYSSQETLTRCDLYRISWLPEMVTTITYFSHYPWPIRA
TVTKAIGEFRRTHSDTWEIQKEQFTEEQLEVVCFTFLLLL
Download sequence
Identical sequences D8SF26
jgi|Selmo1|179234|estExt_Genewise1Plus.C_510265 XP_002981990.1.77236

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]