SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000003202 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000003202
Domain Number 1 Region: 259-538
Classification Level Classification E-value
Superfamily SPOC domain-like 2.94e-83
Family Ku70 subunit middle domain 0.000000000758
Further Details:      
 
Domain Number 2 Region: 38-257
Classification Level Classification E-value
Superfamily vWA-like 3.61e-58
Family Ku70 subunit N-terminal domain 0.0000000087
Further Details:      
 
Domain Number 3 Region: 565-612
Classification Level Classification E-value
Superfamily SAP domain 0.000000000119
Family SAP domain 0.00022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000003202   Gene: ENSCPOG00000003542   Transcript: ENSCPOT00000003586
Sequence length 614
Comment pep:known_by_projection scaffold:cavPor3:scaffold_28:25143196:25165118:1 gene:ENSCPOG00000003542 transcript:ENSCPOT00000003586 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSGWESYYKTEGGGNSEEEFSEHNSACFYPLGEYKYSGRDSLIFLVDASRAMFVSQGENE
LTPFDMSIQQCIESVYTSKIISSDRDLLGVVFYGTKKDKNSVNFKNIYVLQELDNPGAKR
VLELDRFKGQPGQDHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNNDDP
HGDDSAKASRARTKASDLRDTGIFIDLMHLKKCGGFDISLFYRDIISVAEDSDLGVHFEE
SSKLEDLLRKVRAKENRKRVLSRLKFKLDKDTALTVGIYNLVQKANKPPPVRLYRETNEP
VKTKTRTFSVNTGSLLLPSDTKRSQMYGNRKIVLEKEETEQLKRFDEPGLILIGFKPLAL
LKKHHYVRPSLFVYPEESLVNGSSTLFSALLIKCLEKEVIAVCRYTPRKSVPPYFVALVP
QEEELDDQKIQVTPPGFQLVFLPYADDKRNVPITEKVVANSEQIDKMKAIVQKLRFKYRS
DSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVEEFKDLVYPPDYS
PEGKATKRKQDGEGSGSKRPKVELSKEELKAHATKGTLGKLTVPMLKEACRVCGLKGGLK
KQELLDMLTQHFLK
Download sequence
Identical sequences ENSCPOP00000003202 ENSCPOP00000003202 10141.ENSCPOP00000003202

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]