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Domain assignment for ENSCPOP00000003807 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000003807
Domain Number 1 Region: 1673-1766,1805-1854
Classification Level Classification E-value
Superfamily RNase III domain-like 1.46e-41
Family RNase III catalytic domain-like 0.00071
Further Details:      
 
Domain Number 2 Region: 1293-1370,1556-1601
Classification Level Classification E-value
Superfamily RNase III domain-like 2.35e-30
Family RNase III catalytic domain-like 0.0088
Further Details:      
 
Domain Number 3 Region: 57-212,435-553
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.21e-30
Family Tandem AAA-ATPase domain 0.002
Further Details:      
 
Domain Number 4 Region: 929-988
Classification Level Classification E-value
Superfamily PAZ domain 0.000000000958
Family PAZ domain 0.009
Further Details:      
 
Domain Number 5 Region: 1813-1924
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.00000612
Family Double-stranded RNA-binding domain (dsRBD) 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000003807   Gene: ENSCPOG00000004221   Transcript: ENSCPOT00000004266
Sequence length 1929
Comment pep:known_by_projection scaffold:cavPor3:scaffold_114:233037:273202:1 gene:ENSCPOG00000004221 transcript:ENSCPOT00000004266 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVPQQVSAVRTHSDLK
VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCSVALNVLKNGYLSLSDINLLVFDECHLA
ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALTFINDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDEDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEAD
VDPVVDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
GTFYSTLYLPINSPLRASIIGPPMSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPNQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPIDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
EKSEARIGIPNTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAGDAGV
GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSCLAESDNYCKHSTIVVPENAAHQGANR
TSLENHDQMSVNCRALLSESPGKLQIEVSTDLTAINGLSYNKNLANGSYDLANRDFCQGN
QLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVMAA
IPGTTDAIQVLKDRMDSERSSSLGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
LPPGYVVNQDKSNTDKWEKDGMTKDCMLANGKLDDDYEEEEEEEEEEEEEEEDLMWRAPK
EEAEYEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMP
FSSDFEDFDYSSWDAMCYLDPAKLLKRDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQC
IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTGREKALCPARENFSSQ
QKSLSGSCASAAAAGSRSSACKDLEYGCLKIPPRCMFDHPDADKTLTHLISGFENFEKKI
NYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLT
DLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSE
EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSP
VRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK
ANQPQVPNS
Download sequence
Identical sequences ENSCPOP00000003807 10141.ENSCPOP00000003807 ENSCPOP00000003807 XP_003463041.3.53824

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