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Domain assignment for ENSCPOP00000007329 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000007329
Domain Number 1 Region: 41-176
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 8.19e-20
Family Canonical RBD 0.004
Further Details:      
 
Domain Number 2 Region: 223-319
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.00000000000739
Family Canonical RBD 0.005
Further Details:      
 
Domain Number 3 Region: 176-211
Classification Level Classification E-value
Superfamily Ran binding protein zinc finger-like 0.0000628
Family Ran binding protein zinc finger-like 0.003
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000007329
Domain Number - Region: 639-690
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00935
Family Classic zinc finger, C2H2 0.03
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000007329   Gene: ENSCPOG00000008151   Transcript: ENSCPOT00000008226
Sequence length 815
Comment pep:known_by_projection scaffold:cavPor3:scaffold_8:25126987:25161507:1 gene:ENSCPOG00000008151 transcript:ENSCPOT00000008226 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGSDKRVSRTERSGRYGSIIDRDDRDERESRSRRRDSDYKRSSDDRRGDRYDDYRDYDSP
ERERERRNSDRSEDGYHSDGDYGEHDYRHDISDERESKTIMLRGLPITITESDIREMMES
FEGPQPADVRLMKRKTGVSRGFAFVEFYHLQDATSWMEANQKKLVIQGKHIAMHYSNPRP
KFEDWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQSVDYYCDTIILRNIAP
HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP
LKIDGKTIGVDFAKSARKDLVLPDGNRVSAFSVASTAIAAAQWSSTQSQSGEGGSVDYSY
LQPGQDGYAQYAQYSQDYQQFYQQQTGGLESDVSSVSGSAVTTTSAAVVSQSPQLYNQTS
NPPGSPTEEAQPSTSTSTQAPAASPTGVVPGTKYAVPDTSTYQYDESSGYYYDPTTGLYY
DPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSHQQTGLPPAKEGKEKKEKPKSKTAQQI
AKDMERWAKSLNKQKENFKNSFQPVNSLREEERRESAAADAGFALFEKKGAIAERQQLIP
ELVRNGDEENPLKRGLVAAYSGDSDNEEELVERLESEEEKLADWKKMACLLCRRQFPNRD
ALIRHQQLSDLHKQNMDIYRRSRLSEQELEALELREREMKYRDRAAERREKYGIPEPPEP
KRKKQFDAGTVNYEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEAQVRLK
GAGLGAKGSAYGLSGADSYKDAVRKAMFARFTEME
Download sequence
Identical sequences 10141.ENSCPOP00000007329 ENSCPOP00000007329 ENSCPOP00000007329

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