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Domain assignment for ENSCPOP00000008266 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000008266
Domain Number 1 Region: 167-380
Classification Level Classification E-value
Superfamily Neurotransmitter-gated ion-channel transmembrane pore 7.72e-53
Family Neurotransmitter-gated ion-channel transmembrane pore 0.0031
Further Details:      
 
Domain Number 2 Region: 3-167
Classification Level Classification E-value
Superfamily Nicotinic receptor ligand binding domain-like 3.92e-43
Family Nicotinic receptor ligand binding domain-like 0.0043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000008266   Gene: ENSCPOG00000009206   Transcript: ENSCPOT00000009291
Sequence length 381
Comment pep:known_by_projection scaffold:cavPor3:scaffold_151:1972298:2213803:1 gene:ENSCPOG00000009206 transcript:ENSCPOT00000009291 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
AVFQEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITT
PNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKN
SVEAADQKSWRLYQFDFMGLRNTTETVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCIL
TVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARNSLPRVSYVTAMDLFVTVCFLF
VFAALMEYATLNYYSSCRKPATTKKKTSLLHPESSRWIHERISLQTPSTYSLLDMRPPPP
AMLSLNNSVYWQEFEDTCLYECLDGKDCQSFFCCYEECKSGSWRKGRIHIDIAELDSYSR
VFFPTSFLLFNLVYWVGYLYL
Download sequence
Identical sequences ENSCPOP00000008266 ENSCPOP00000008266 10141.ENSCPOP00000008266

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