SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000009111 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000009111
Domain Number 1 Region: 227-452
Classification Level Classification E-value
Superfamily vWA-like 2.23e-60
Family Integrin A (or I) domain 0.00021
Further Details:      
 
Domain Number 2 Region: 30-221
Classification Level Classification E-value
Superfamily vWA-like 8.38e-54
Family Integrin A (or I) domain 0.00026
Further Details:      
 
Domain Number 3 Region: 453-496
Classification Level Classification E-value
Superfamily Chicken cartilage matrix protein 2.35e-17
Family Chicken cartilage matrix protein 0.00055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000009111   Gene: ENSCPOG00000010146   Transcript: ENSCPOT00000010239
Sequence length 496
Comment pep:known_by_projection scaffold:cavPor3:scaffold_25:6236927:6244411:1 gene:ENSCPOG00000010146 transcript:ENSCPOT00000010239 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MKVISGTSLGFCALLLLLQAPRGHGLVPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKV
KVFLSQVIESLDVGPNATQVGLVNYASSVKQEFPLRAHSSKAALLQAVHRIQPLSTGTMT
GLALQFAITRTLSDAEGGRTRSPDISKVVIVVTDGRPQDSVQEVSARARASGIELFAIGV
GRVDKATLRQMASEPQDEHVDYVESYSVIDKLSKKFQEAFCVVSDLCATGDHDCEQVCLS
SPGSYTCACHEGFTLNSDGKSCNVCSNGSGSSATDLVFLIDGSKSVRPENFELVKKFINQ
IVDTLDVSDRLAQVGLVQYSSSVRQEFPLGRFHTKKDIKAAVRNMSYMEKGTMTGAALKY
LIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAARKAKDLGFKMFAVGVGNAVEDELR
EIASEPVTEHYFYSADFKTINQIGKKLQRKICVEEDPCACESIVKFQAKVEGLLQALARK
LEAVSKRLAILENRIV
Download sequence
Identical sequences ENSCPOP00000009111 ENSCPOP00000009111 10141.ENSCPOP00000009111

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]