SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000015628 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000015628
Domain Number 1 Region: 673-780
Classification Level Classification E-value
Superfamily SRCR-like 3.27e-44
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0000968
Further Details:      
 
Domain Number 2 Region: 1-105
Classification Level Classification E-value
Superfamily SRCR-like 1.44e-42
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00012
Further Details:      
 
Domain Number 3 Region: 431-536
Classification Level Classification E-value
Superfamily SRCR-like 1.44e-42
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0000889
Further Details:      
 
Domain Number 4 Region: 538-642
Classification Level Classification E-value
Superfamily SRCR-like 3.4e-42
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0000722
Further Details:      
 
Domain Number 5 Region: 105-209
Classification Level Classification E-value
Superfamily SRCR-like 2.09e-39
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00017
Further Details:      
 
Domain Number 6 Region: 212-315
Classification Level Classification E-value
Superfamily SRCR-like 2.22e-39
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00017
Further Details:      
 
Domain Number 7 Region: 328-430
Classification Level Classification E-value
Superfamily SRCR-like 1.24e-34
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00014
Further Details:      
 
Domain Number 8 Region: 890-984
Classification Level Classification E-value
Superfamily SRCR-like 3.53e-33
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00024
Further Details:      
 
Domain Number 9 Region: 782-866
Classification Level Classification E-value
Superfamily SRCR-like 4.97e-32
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00033
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000015628   Gene: ENSCPOG00000001267   Transcript: ENSCPOT00000027523
Sequence length 984
Comment pep:known_by_projection scaffold:cavPor3:scaffold_1:45072456:45144395:-1 gene:ENSCPOG00000001267 transcript:ENSCPOT00000027523 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
LRLVNGTGRCSGRVEVSYHGTWGSVCDEGWGLPEAQVVCRQLGCGLALSAPLGAHFGPGF
GKILLDNVRCTGTESSLSLCAHDSWFTHDCSHEEDAGVICSDRTWMAVRLLNGTERCSGR
VEVLVQGTWRTVCDDLWDLAEAPVVCRQLQCGQAVAAPTGAHFGAGSGKILLDDVQCEGS
ESHLGQCVHGGQARHNCGHLEDAGVICAAGSWMAVRLLNGTGRCSGRVEVLVQGTWRTVC
DDFWDLAEATVVCRQLQCGQAVAAPTGAHFGAGSGKILLDDMQCEGSESHLGQCVHGGQA
RHNCGHLEDAGVVCTVGVDFEVHSPVLSRLIGGHTDCAAFFSIVYQGTWGTVCDDLWDLN
EAEVVCRQLRCGRAISALGKAHFGPGPGEILLDNLQCAGVERFLGQCAHSGWLEHNCGHH
EDASVICSGNWPELRLVGGSGRCSGRVEVLHQGVWGTVCDDLWDLNEAKVVCRQLGCGQA
VSSPGEAHFGAGTGSIFLDNLQCSGMERFLGQCAHLGWSEHNCGHHEDAGVICSDAPVLR
LAGSSNRCSGRVEVLHQGAWGTVCDDLWDLNEAEVVCRQLECGQAVAAPGNAYFGRGSGD
ILLDNIQCSGSENHLGQCPSSGWSDHNCGHHEDAGVVCSEMSSQLPSSLPLSPGHSSSPT
LPRILELPMLASGHVALRLTKGSHHCEGRVELHYNGTWGTVCDDSWDLHDAQVVCKQLGC
GRAIAALRQAHFERGEGPIILDDVKCLGTEARLWQCLHSGWFIHNCGHHEDAGVICSDLP
VVRLAEGRNRCEGRVELHHNGTWGSVCDDLWDLPAAQVVCQQLGCGTALAAPRGSPFGDG
SGPIFLDDVQCTGGEINLVRCLSPWCQEKRVPCPVSQPIPMSLRRKRSHEHTRCEGRVEV
YHNGTWGTMCDDLWALRAAHVVCRQLGCGESISAPGGGHFGEGAGHILLDDVRYQGNETS
LGQCCPLGLSVHNCGHHEDAGVIC
Download sequence
Identical sequences ENSCPOP00000015628 ENSCPOP00000001148 10141.ENSCPOP00000015628

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]