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  Home > Genomes > Cavia porcellus 76_3 > ENSCPOP00000016474

Domain assignment for ENSCPOP00000016474 from Cavia porcellus 76_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000016474
Domain Number 1 Region: 304-549
Classification Level Classification E-value
Superfamily YWTD domain 6.41e-47
Family YWTD domain 0.0000197
Further Details:      
 
Domain Number 2 Region: 2-256
Classification Level Classification E-value
Superfamily YWTD domain 5.89e-42
Family YWTD domain 0.000025
Further Details:      
 
Domain Number 3 Region: 1439-1694
Classification Level Classification E-value
Superfamily YWTD domain 1.09e-40
Family YWTD domain 0.0000209
Further Details:      
 
Domain Number 4 Region: 612-878
Classification Level Classification E-value
Superfamily YWTD domain 1.44e-31
Family YWTD domain 0.00012
Further Details:      
 
Domain Number 5 Region: 2315-2593
Classification Level Classification E-value
Superfamily YWTD domain 2.88e-31
Family YWTD domain 0.0000791
Further Details:      
 
Domain Number 6 Region: 1350-1431,1687-1748
Classification Level Classification E-value
Superfamily Growth factor receptor domain 1.3e-23
Family Growth factor receptor domain 0.016
Further Details:      
 
Domain Number 7 Region: 2225-2339,2585-2633
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000000973
Family Growth factor receptor domain 0.02
Further Details:      
 
Domain Number 8 Region: 1314-1355
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000249
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 9 Region: 2182-2221
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000301
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 10 Region: 1183-1219
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000432
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 11 Region: 1976-2011
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000432
Family LDL receptor-like module 0.00098
Further Details:      
 
Domain Number 12 Region: 1776-1816
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000484
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 13 Region: 2097-2141
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000511
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 14 Region: 2055-2091
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000055
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 15 Region: 2016-2053
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000641
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 16 Region: 969-1010
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000654
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 17 Region: 1899-1935
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000668
Family LDL receptor-like module 0.00087
Further Details:      
 
Domain Number 18 Region: 1226-1261
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000785
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 19 Region: 1103-1140
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 20 Region: 1738-1773
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000236
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 21 Region: 1859-1895
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000576
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 22 Region: 258-308
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000768
Family EGF-type module 0.012
Further Details:      
 
Domain Number 23 Region: 1933-1973
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000877
Family LDL receptor-like module 0.00096
Further Details:      
 
Domain Number 24 Region: 1818-1855
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000956
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 25 Region: 1013-1050
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000144
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 26 Region: 1262-1303
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000157
Family LDL receptor-like module 0.00087
Further Details:      
 
Domain Number 27 Region: 1143-1180
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000157
Family LDL receptor-like module 0.00079
Further Details:      
 
Domain Number 28 Region: 934-971
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000017
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 29 Region: 1064-1099
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000249
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 30 Region: 568-617
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000323
Family EGF-type module 0.0091
Further Details:      
 
Domain Number 31 Region: 2143-2175
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000445
Family LDL receptor-like module 0.0026
Further Details:      
 
Domain Number 32 Region: 2811-2852
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000594
Family EGF-type module 0.042
Further Details:      
 
Domain Number 33 Region: 2712-2747
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000785
Family EGF-type module 0.028
Further Details:      
 
Domain Number 34 Region: 2676-2711
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000914
Family EGF-type module 0.011
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000016474
Domain Number - Region: 2638-2675
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000144
Family EGF-type module 0.016
Further Details:      
 
Domain Number - Region: 888-949
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0185
Family EGF-type module 0.014
Further Details:      
 
Domain Number - Region: 2749-2781
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0207
Family EGF-type module 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000016474   Gene: ENSCPOG00000014122   Transcript: ENSCPOT00000022653
Sequence length 3023
Comment pep:novel scaffold:cavPor3:scaffold_3:46278237:46827465:1 gene:ENSCPOG00000014122 transcript:ENSCPOT00000022653 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
LYARRSEIRGVDIDNPYFNFITAFTVPDIDDVTVIDFDASEERLYWTDIKTQTIKRAFIN
GTGLETVISRDIQSIRGLAVDWVSRNLYWISSEFDETQINVARLDGSLKTSIIHGIDKPQ
CLAAHPVRGKLYWTDGNTINMANMDGSNSKILFQNQKEPVGLSIDYVENKLYWISSGNGT
INRCNLDGGNLEVIESMKEELTKATALTIMDKKLWWADQNLAQLGTCSKRDGRNPTILRN
KTSGVVHMKVYDKEAQQGSNSCHLNNGGCSQLCLPTSENTRTCMCTVGYYLQKNRMSCQG
IESFLMYSVHEGIRGIPLEPSDKMDALMPISGTSFAVGIDFHAENDTIYWTDMGFNKISR
AKRDQTWKEDIITNGLGRVEGIAIDWIAGNIYWTDHGFNLIEVARLNGSFRYVVMSQGLD
QPRSIAVHPEKGFLFWTEWGQMPRIGKSRLDGSEKLVLVSTGIAWPNGISIDYEENKLYW
CDARTDKIERIDLETGSNREMVLSGSNVDMFSVAVFGAYIYWSDRAHANGSIRRGHKNDA
TEMVTMRTGLGVNLKEIKIFNRVREKGTNICAKDNGGCKQLCLYRGNSRRTCACAHGYLA
EDGVTCLRHEGYLLYSGRTILKSIHLSDETNLNSPIRPYGNPHYFKNVIALAFDYNQRRK
GTNRIFYSDAHFGNIQLIKDNWEDRQVIVENVGSVEGLAYHRAWDTLYWTSSTTSSITRH
TVDQTRPGAFDREAVITMSEDDHPHVLALDECQNLMFWTNWNEQHPSIMRSTLTGKNAQV
VVSTDILTPNGLTIDHRAEKLYFSDGSLGKIERCEYDGSQRHVIVKSGPGTFLSLAVYDN
YIFWSDWGRRAILRSNKYTGGDTKILRSDIPHQPIGIIAVANDTNTCELSPCAVLNGGCH
DLCLLTPDGRVNCSCRGDRILLDDNRCVTKNSSCNIYSEFECGNGECIDYQLTCDGTPHC
KDKSDEKLLYCENRSCRRGFKPCHNRRCIPHAKLCDGENDCGDNSDELDCKVSTCATVEF
HCADGTCIPRSARCNQNIDCADASDEKNCNNTDCTHFYKLGVKTEGFIKCNSTSLCVLPT
WICDGSNDCGDYSDELKCPVQNKHKCEENYFGCPSGRCILNTWICDGQKDCEDGLDELHC
DSSCSWSQFACSAQKCISKHWVCDGEDDCGDGLDESDSICGDITCAADMFSCQGSHACVP
RHWLCDGERDCPDGSDELSTAGCAPNNTCDENAFMCHNKVCIPKQFVCDHDDDCGDGSDE
LLKCGYRQCSAEEFRCADGRCLLNTQWQCDGDFDCPDHSDEAPLNPKCKHAEQSCNSSFF
MCKNGRCIPSGNLCDSKDDCGDGSDERNCHINECLSKKTSGCSQDCQDLPVSYKCKCWPG
FQMKDDGKTCVDIDECSSGFPCSQHCINTYGTYKCLCTDGYKIQPDNPNGCKSLSDEEPF
LILADHHEIRKISTDGSNYTLLKQGLNNVIAIDFDYREEFIYWIDSSRPNGSRINRMYLN
GSDIKVVHNTAVPNALAVDWIGKNLYWSDMEKRIIEVSKVNGLYPTILVSKRLKFPRDLS
LDPRAGYLYWIDCCEYPHIGRVGMDGTNQSVVIETKISRPMALTIDYVNHRLYWADENHI
EFSNMDGSHRHKVPNQDIPGVIALTLFEDYIYWTDGKTKSLNRAHKTSGADRLSLVSSWH
VITDVQVYHSYRQPDVPKHLCMINNGGCSHLCLLAPGKTHTCACPTNFYLAADNRTCLSN
CTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDDCPEFKCQPGRFQCGTGLCALPAFIC
DGENDCGDNSDELNCDTHVCLSGQFKCTKNQKCIPVNLRCNGQDDCGDEEDERDCPENSC
SPDYFQCKTTKHCISKLWVCDEDPDCADASDEANCDKKTCGPHEFQCKNSNCIPDHWRCD
SQNDCSDNSDEENCKPQTCTLKDFLCASGDCVSSRFWCDGDFDCADGSDERHCEVSCSKD
QFQCSNGQCISAKWKCDGHEDCKYGEDEKNCEPASPSCSSSEYICTSGGCISASLKCNGE
YDCADGSDEMGCVTECKENQFRCKNKAHCIPVRWLCDGIHDCMDGSDEEICDRGGNICRA
DEFLCNNSLCKLYFWVCDGQDDCGDNSDEAPDMCVKFLCPPTRPHRCRNNRICLQSEKTC
NGVDDCGDNSDEEHCGGKVTYKAKPCKKDEFTCSNKKCIPMDLQCDRLDDCGDGSDEQSC
RTTPTEYTCEDNVNPCGDDAYCNQIKTSVFCRCKPGFQRNMKNRQCEDLNECLVFGMCSQ
QCINIEGSYKCVCDQNFQVQNNTCIAKGSEDQVLYIANDTDILGFIYPFNYSGNHQQISH
IEHNSRITGMDVYFQRDMIIWSTQFNPGGIFYKMIHGREKREANSGLICPEFKRPRDIAV
DWVAGNIYWTDHSRMHWFSYYTTPWANLRYSVNVGQLNGSNCTRLLTNMAGEPYAIAVHP
KRGMMYWTVIGDHSHIEEAAMDGTLRRILVQKNLQRPTGLAVDHLTERIYWADVELSIIG
SVLYDGSNSIVSVSSKQGLLHPHRIDIFEDYIYGAGPKNGVFRVQKFGHGSVQYLALHVD
KTKGVLISHRYKQLDLPNPCLDLACEFLCLLNPFGATCVCPEGKYLTNGSCSDENVLDDS
CKLTCENGGRCILNEKGDVRCHCWPSYSGERCEVNHCSNYCQNGGTCTPSVLGRPTCSCA
LGFTGPNCGKTVCEDFCQNGGTCIVTAGNQPYCHCQAEYTGDRCQYYVCHHYCVNSESCT
IGDDGSVECVCPTRYEGQKCEVDKCARCHGGHCIINKDNEDIVCNCTNGKISSSCQLCDG
YCYNGGTCQLDPETSVPVCLCSTNWSGTQCERPAPKSSKSDHISTRSIAIIVPLVLLVTL
ITTLVIGLVLCKRKRRTKTIRRQPIINGGINVEIGNPSYSMYEVDHDHNDGTLLDPGFMV
DPTKARYIGGGPSAFKLSHTAPPIYLNSDLKGPLTAGPTNYSNPVYAKLYMDGQNCRNSL
GSVDERKELLPKKIEIGIRETVA
Download sequence
Identical sequences ENSCPOP00000016474

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.