SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000017371 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000017371
Domain Number 1 Region: 89-122
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000072
Family LDL receptor-like module 0.0038
Further Details:      
 
Domain Number 2 Region: 172-213
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000681
Family LDL receptor-like module 0.0037
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000017371
Domain Number - Region: 136-165
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000144
Family LDL receptor-like module 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000017371   Gene: ENSCPOG00000005479   Transcript: ENSCPOT00000025063
Sequence length 215
Comment pep:known_by_projection scaffold:cavPor3:scaffold_88:5835730:6014882:1 gene:ENSCPOG00000005479 transcript:ENSCPOT00000025063 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
GIERKSPFFAWGFWFVGQAGADRNLLCFWQQQPLPGGHGPCCSRRGACLSALLLLLLAML
AALVALVSSLGLPSRTPGAQVCVTPTNRTGFLCHDQRSCIPASGVCDGLRTCPHGEDEDE
SLCRDVPRSLPSFLVARCGDPASWIYSDQKCDGTNNCGDCSDELSPVTECPPCGPGWWRC
PSTFFKYCDCVPRTLCQDGTQHCTDWSDEYSCLRP
Download sequence
Identical sequences ENSCPOP00000017371 10141.ENSCPOP00000017371 ENSCPOP00000004934

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]