SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000019727 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000019727
Domain Number 1 Region: 376-424
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000524
Family Classic zinc finger, C2H2 0.028
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000019727
Domain Number - Region: 435-459
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00522
Family Classic zinc finger, C2H2 0.043
Further Details:      
 
Domain Number - Region: 48-162
Classification Level Classification E-value
Superfamily SET domain 0.018
Family Histone lysine methyltransferases 0.061
Further Details:      
 
Domain Number - Region: 196-223
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0207
Family Classic zinc finger, C2H2 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000019727   Gene: ENSCPOG00000022753   Transcript: ENSCPOT00000022143
Sequence length 526
Comment pep:novel scaffold:cavPor3:scaffold_1279:3348:18007:-1 gene:ENSCPOG00000022753 transcript:ENSCPOT00000022143 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAEDGSEEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSSLPSNLEIRRLEDGA
EGVFAVTQLVRRTQFGPFESRRVAKWEKESAFPLKVFRKDGHPVCFDTSNEDDCNWMMLV
RPAAEPGHQNLTAFQQGSDVYFTTSCDIPPGTELRVWYAAFYAKKMDKPMLKQAGSNGHA
TGTPEVSTPAEAERERGPWACKVCASSFLELQLLNEHLLGHLEHGKGLPPGSQPEAAAEP
EKEPSAPCGEPPTAPESTTAAAESSGPPKEQRKKPRRGRKPKGSKPQQPLVISEGKEPAE
QVAEIITEVPPDEPASETPDERIMELVLGKLATPSDTISSVPKFTSSALALKRGLVLASR
HGIRRKLARQLGEHKRVHQCEVCSKVFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESL
KQHVSYKHSRNEVDSEYRHRCGTCGKTFRMESALEFHNCRTGERAVAGRGRDDGTSVYSS
PPTAISPSTRRSTGTRSSPAGSVARCSTARMSCWTTSGATWREESE
Download sequence
Identical sequences 10141.ENSCPOP00000019727 ENSCPOP00000016385 ENSCPOP00000019727

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]