SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCPOP00000016305 from Cavia porcellus 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCPOP00000016305
Domain Number 1 Region: 429-491
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000248
Family Classic zinc finger, C2H2 0.02
Further Details:      
 
Domain Number 2 Region: 101-138
Classification Level Classification E-value
Superfamily SET domain 0.0000997
Family Histone lysine methyltransferases 0.042
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000016305
Domain Number - Region: 153-181
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00686
Family Classic zinc finger, C2H2 0.05
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000016305   Gene: ENSCPOG00000019738   Transcript: ENSCPOT00000024268
Sequence length 492
Comment pep:known_by_projection scaffold:cavPor3:scaffold_5:4255819:4259122:1 gene:ENSCPOG00000019738 transcript:ENSCPOT00000024268 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MEDSGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL
KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDREEQNLEAYIKNGQLFYRSLRRI
AKDEELLVWYGKELTELLLLCPSRPHNKLNGSSPYSCLECSQRFQFEFPYVAHLRFRCPK
RLHSADLSPQDEQGGGVGTKDQGGGGGGKEQQPQQEASLGPGPKFCKAGPIHHYPAPSPE
SSNPPPSAGSTSSSSSSSAKPSTDFHNLARELENSRGGGSCSPASGLSGGCSGAGHQEAE
LSPDGAAAGGCKGKRKFPEEAAEVQGGPGVHAQQYRAFGSYFGAGPEAGALESFHPVTAW
APPDCTPAPADPLAVKLQGAADLMPKQSPFLYATAFWPKSSGPLQLQLPAALTLLPPSFT
SLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRE
RHHLSRHMTSHN
Download sequence
Identical sequences ENSCPOP00000016305 ENSCPOP00000016305 10141.ENSCPOP00000016305

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]