SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Lotgi1|228874|estExt_fgenesh2_pg.C_sca_40410 from Lottia gigantea

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Lotgi1|228874|estExt_fgenesh2_pg.C_sca_40410
Domain Number 1 Region: 279-409
Classification Level Classification E-value
Superfamily C-type lectin-like 1.56e-20
Family C-type lectin domain 0.0027
Further Details:      
 
Domain Number 2 Region: 1097-1235
Classification Level Classification E-value
Superfamily C-type lectin-like 1.75e-20
Family C-type lectin domain 0.0081
Further Details:      
 
Domain Number 3 Region: 840-963
Classification Level Classification E-value
Superfamily C-type lectin-like 0.00000000021
Family C-type lectin domain 0.0082
Further Details:      
 
Domain Number 4 Region: 622-711
Classification Level Classification E-value
Superfamily C-type lectin-like 0.0000000455
Family C-type lectin domain 0.011
Further Details:      
 
Domain Number 5 Region: 10-64
Classification Level Classification E-value
Superfamily Complement control module/SCR domain 0.000000208
Family Complement control module/SCR domain 0.0039
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Lotgi1|228874|estExt_fgenesh2_pg.C_sca_40410
Sequence length 1335
Sequence
MHLSFQITVVDCGNIPLTSEMITFYNSTIFGSDVRYVCPSGYTRINGMNTVVYTCESSGQ
WNSTDMEDLLCPRRFKTYYGCFDVSLFQATNQSFDMVFDCVNYCRNNDFSFGGMMIDKCY
CKDDIALKMELNNSICDTPCSSGRFICGGQGVVSTHVTYAGCYRFAEAITLEFKADGNVL
QLTCVETCRGIRKKLAIYINGRCSCKDGFNYPVATWNGCATATFNDTITTVDSAFIMTVA
KTGPIYRDCDALYQAGIRRHGIYILQDGTNVSCHFKDGTICPTSWLGNGGNCYYFDITKR
SPGAALQNCLEQNSFLLSIESKDENDFISEALNTFSDFEENEWLMGHYGIGVQYRMFSDG
SLTLYHNHDPKISTLDRNCTVLRKKSDGEVAWTPRDCGDLHKNSICKKAEEYLGVYAIPN
KTAELINVDMGIMLCVETCRVRNTSLALISQLKCWCDDILPPTTDKTGREYCYLKGQPCG
SEFTADVYSVDVYPSLALSCNDLFNQGIFLSGLYMINGTSTNCQFIDNDSGDEYEDWVYV
HGKNFRLIHSKVKPSQYDDTCKLYGGVPATLSTLDQYHTMLQLIKLDKLLAKSCEELEFN
GVKGGTFKLIYPDGTTRKQFCNDSSCPPSWITVNDHCYKFISADDTGVNSCPRMVAYDAV
VDSDAEIEDISSAIENIDFLKTTQKNWKIGLFDFADNGFYRWFNGRYVEERYSALEYLGV
YAIPNKTAELINVDMGIMLCVETCRVRNTSLALISQLKCWCDDILPPTTDKTGREYCYLK
GQPCGSEFTADVYSVDVYPSLALSCNDLFNQGIFLSGLYMINGTSTNCQFIDNDSGDEYE
DWVYVHGKNFRLIHSKVKPSQYDDTCKLYGGVPATLSTLDQYHTMLQLIKLSKLGLNKLI
LVGLRDQFARGQFSWADGSLFRQLPWLFSVSNTKSTYAAIDINNGYLTNSISDNTKYAML
CMKEKDYIGCFGEEESVLDSYIVLSNYKSMTVSQCQQLCYKKDVLGDVYILVNVNNCYCI
YDVTVINEQLTSVNSTFCDIPCPGNDLQKCGFLGYVRAYISDRVKAASTCLELHANGVMV
KNEYTMHLQNGTLIQEQCSFSENSTGCDIGWIRFNNTCFWPEPQSKSHQKEASKICVSKN
GYLATVRDSDDIAFFRTLIETTPPWENLTLWHTGISDALINGKYVLPNGLHYNTDGFAWL
DSKTVTKNCGALDTSSGYLEWIDCEERLPFICQKDEYVRCELNQQLATYVTGIDSNFNIQ
QCVEICRTINNTVRIGLRDETCNCYNQAVYFNDRRGVCDKSCQVYSNQPCGPKMSDSETV
IELGLYTSSSKNCNE
Download sequence
Identical sequences V4BRK3
XP_009058204.1.39240 jgi|Lotgi1|228874|estExt_fgenesh2_pg.C_sca_40410

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]