SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Lotgi1|104793|e_gw1.3.304.1 from Lottia gigantea

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Lotgi1|104793|e_gw1.3.304.1
Domain Number 1 Region: 92-377
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 3.8e-58
Family Nuclear receptor ligand-binding domain 0.0000351
Further Details:      
 
Domain Number 2 Region: 24-106
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 5.6e-29
Family Nuclear receptor 0.00011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Lotgi1|104793|e_gw1.3.304.1
Sequence length 378
Sequence
MQEYQEATNEIQDRSLTANDLHGTKCLVCEDRASGFHYSVFSCEGCKGFFKRTVQKALTY
VCREQGNCVINKFTRNSCQHCRYNKCVAQGMRKEAVREDRSPGGKHRLKRPRLEEIPGTL
DAKDEIYDSMIETLVNAQPDIFPKSESRFLSKVLFQQKRLNIRGLGYYNDKLICYYIIEN
FGGNIGVNDLMQYGYLELKFIIEWAKKVPGFQEMSMDDQMCLLKSAFMELNVLRLAYRSM
NLDRCIKFAEGVVIPTDVAQGMGWGRELVNATIEFTSRLRELKIDRTEFAILNALVLTFP
DAIGIQDKLQVLGLQTKILDALRRYTSRNYPTETRRYGKILLRLPALRTVSAKAAEKFLS
LTLDGSIQLNDLVFEMIT
Download sequence
Identical sequences V4AAQ0
jgi|Lotgi1|104793|e_gw1.3.304.1 XP_009055459.1.39240

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]