SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Lotgi1|105544|e_gw1.4.316.1 from Lottia gigantea

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Lotgi1|105544|e_gw1.4.316.1
Domain Number 1 Region: 6-192
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 3.28e-39
Family Nuclear receptor ligand-binding domain 0.00061
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Lotgi1|105544|e_gw1.4.316.1
Sequence length 194
Sequence
MLPVSARVSDWLVKVIQFAKSVPEFCNLSHNDKVTLILNSWSKILLLFMAENNFQFAVTP
LPSSPVPTEPVPASPDEPSMKSVESIQTFIRKCQHLNIDSEEYSFLRLLVLFNSGYIGLD
RADIIDQLNSTVQQLLQEHVRLTRPNDVMHYSHLLLCLPTLYGTNSKMFETLFCQHITRN
TDMEVLLKEMLQSI
Download sequence
Identical sequences V4BR72
XP_009058035.1.39240 jgi|Lotgi1|105544|e_gw1.4.316.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]