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  Home > Genomes > Lottia gigantea > jgi|Lotgi1|143634|e_gw1.211.1.1

Domain assignment for jgi|Lotgi1|143634|e_gw1.211.1.1 from Lottia gigantea

Domain architecture

Domain assignment details

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Strong hits

Sequence:  jgi|Lotgi1|143634|e_gw1.211.1.1
Domain Number 1 Region: 824-1084
Classification Level Classification E-value
Superfamily YWTD domain 1.57e-46
Family YWTD domain 0.00000335
Further Details:      
 
Domain Number 2 Region: 42-274
Classification Level Classification E-value
Superfamily YWTD domain 6.8e-43
Family YWTD domain 0.0000366
Further Details:      
 
Domain Number 3 Region: 1752-1919
Classification Level Classification E-value
Superfamily YWTD domain 4.45e-34
Family YWTD domain 0.000057
Further Details:      
 
Domain Number 4 Region: 740-816,1086-1142
Classification Level Classification E-value
Superfamily Growth factor receptor domain 1.02e-20
Family Growth factor receptor domain 0.016
Further Details:      
 
Domain Number 5 Region: 1337-1378
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000353
Family LDL receptor-like module 0.00081
Further Details:      
 
Domain Number 6 Region: 1255-1294
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000223
Family LDL receptor-like module 0.00069
Further Details:      
 
Domain Number 7 Region: 537-573
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000733
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 8 Region: 498-534
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000733
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 9 Region: 619-657
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000144
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 10 Region: 1461-1499
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000157
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 11 Region: 365-409
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.0022
Further Details:      
 
Domain Number 12 Region: 1134-1169
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 13 Region: 658-696
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000432
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 14 Region: 1420-1457
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000982
Family LDL receptor-like module 0.0009
Further Details:      
 
Domain Number 15 Region: 576-612
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000196
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 16 Region: 407-444
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000038
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 17 Region: 1501-1539
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000602
Family LDL receptor-like module 0.0024
Further Details:      
 
Domain Number 18 Region: 1585-1631
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000199
Family EGF-type module 0.015
Further Details:      
 
Domain Number 19 Region: 1381-1417
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000223
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 20 Region: 1547-1581
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000511
Family LDL receptor-like module 0.0026
Further Details:      
 
Domain Number 21 Region: 1218-1256
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000602
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 22 Region: 459-492
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000903
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 23 Region: 1175-1215
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000122
Family LDL receptor-like module 0.0028
Further Details:      
 
Domain Number 24 Region: 329-368
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000288
Family LDL receptor-like module 0.0018
Further Details:      
 
Domain Number 25 Region: 1980-2021
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000313
Family EGF-type module 0.023
Further Details:      
 
Domain Number 26 Region: 705-736
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000537
Family LDL receptor-like module 0.002
Further Details:      
 
Domain Number 27 Region: 1298-1337
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000089
Family LDL receptor-like module 0.00081
Further Details:      
 
Weak hits

Sequence:  jgi|Lotgi1|143634|e_gw1.211.1.1
Domain Number - Region: 284-331
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000791
Family EGF-type module 0.046
Further Details:      
 
Domain Number - Region: 2022-2057
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00311
Family EGF-type module 0.016
Further Details:      
 
Domain Number - Region: 2054-2092
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00365
Family EGF-type module 0.046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Lotgi1|143634|e_gw1.211.1.1
Sequence length 2119
Sequence 
MLTKDYFVSISAYTEFLMFSKVTGIDSVSMSRIPSKNPPFKPITNETMQNVIGLAYDYKG
NRLYFSDIQRGDIQSVSFNGSDLQIVKEGVGSAEGLVFDSKNNNLYFTSYTKSSINRIDF
DSDKQELEILIQLSENDHPRAIVLHSCQSRIFWTNWNNENPRIQRSFLDGFGVESIITER
IETPNGLAIDNRAEKLYWSDARLDKIERCNLDGTDRMVIVTSIPQHAFGLTVYGDYMYWT
DWMLRAVLRANKYDGSEITWLVKNIERQPMGIIAVAEDADNCTLSPCYNNTYGCEGECIT
NEKGLPYCVCPPGKFLLPDGRRCATEKNLNCNMTDYVCEDGRMCITIEKTCNGVRDCIDA
SDESEQYCKTRKCPADYYSCNNTRCVYLDKICNGINDCGDNSDEKQCPCGADEFQCDSGM
CISNKYRCDRDDDCPDFSDEKNCNLNCTDVEMDGHKVHDLIPCKKTSACIFEIWKCDGTN
DCWDNSDEENCNNTSRPSDCPPNSFNCTSGVCIPMQWKCDKDFDCADLSDEADCKYTCSE
NEQFACADSTCLPKTWQCDGHPDCPDGSDEVGCDKRQCKEDEFMCTSTGKCIPITWVCDG
DTDCQNDEDEPSNCSKSNVLCEDNEFQCLNRKCIPHTFFCDRDDDCGDNSDEAHCLYPAC
KPDQFKCVERGLCIDESDRCNGLYDCPDHSDEMNCTVESPCGGDKSKHLCSNGLCIDDSN
VCNGRNDCGDYSDEPPNCGINECEGNHLCNHQCKDKKIGYECDCKPGYTLRADDRTCQDV
NECNTTFPCTHYCHNTIGSYHCSCATGYTLSNHRNCKTNKPAELILSNRYYIRNVSLPWG
NTSILKDTLENAVALDVDYKSNYIYWSDISSRSSSINRMRKNDTKGTIEVLHKTTVRNPD
GIAVDWVGNNLYWCDKTTDTIEVSQLNGKYRRILVREGLQEPRGLEVFPSKGVLFYTDWG
DNHHIGRVWMDGSKHETIIKDNLGWPNALTIDYVTEKIIWADGSLDYIAMANLDGSGRRI
IVSESQRVPHIFDLATFENFIYWTDWEHMGIFYANKFTGANVSQLMSFVHKPMGLQIYHP
LKQVMLEKDPCEKKGCSHLCLLRPRKGNLDDLESVCSCPENFHLSKDNKQCISNCTSAQF
LCQESSKCIPSWWKCDGHDDCGDGSDEPPNCAKYHCLRTGFFQCKSATSSNDCIPPGLIC
NGVKDCKDESDEFDCKSFPCLDHHFKCRADDKCIPEFQKCDGNKTCSDGEDEKDCPMRTC
SANQFQCNNGLCVPYVWKCDKDDDCGDSSDEPHNCTLLACKDKHIKCNKSGRCIPEAWQC
DGDRDCGEDDKSDEDPELCHTRTCDPTYFACTNSHCIPGRWKCDGYDDCRDNSDEIDCDP
RNCSESEWQCNIGKCIHKNLRCNKEINCEDGSDEVDCQNITCDADEFTCKNIKHCIPVGW
QCDGDTDCADGTDEWNCSKYNRTCTEHEYKCKNSICLSALWQCDGDNDCGDNSDEQDCEN
YTCTPGRFRCRQDHICIWNNMVCDGKLDCKHGEDENTTLCKLTQFLTWIHCGELLCISAH
KVCDNHPDCKDGSDELEKFCNTTTCAIRNGGCEQNCEEIYSRVVCSCNDGYRLRKDGTHC
MRFNPCKEFGVCSQLCESNDFKPKCSCDKGFIAVANSSCIADGKQDITLYVKLLDLTMVT
NDDFYQNTHNHIVAMDVDVSRKDWLAFTVVLSKNHTWIVNSMKIPKGQITFKPNGKRPKR
DTSNVSISLVCFADIRGLTADWIGEHIYWTEGTTHSIKVAQYDGKQANTIVKDNLEDPQD
IVVHPKDKQLFWSDLGLRPRIERSNLDGSNRTVIVSEDLSWPNGLAVDYYNERLYWADTK
KYTIESVDLNGDDRRVIHKLNASDPPYKLEVFENFIYVLTYKNFDVLRMHKFGKPDQVLK
KMYESSDKIQAVVILQENKQKKSNTCVETQMCFNDWSEKGHSCKCPDNSELEDKKCSFQK
EKDTCQPGYCHNNGTCSKNVHNKLKCDCSSQYSGERCEHNTTEKCAHCFNEATCETEASG
YVRCHCQPGFVGVHCNQCEDLHCYNGGVCHHDKNNTAYCSCLPGYHTPNCARSIQNCDEI
CQSTVEDKGSIQSLSTGRY
Download sequence
Identical sequences V4C597
XP_009052539.1.39240 jgi|Lotgi1|143634|e_gw1.211.1.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.