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  Home > Genomes > Lottia gigantea > jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018

Domain assignment for jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018 from Lottia gigantea

Domain architecture

Domain assignment details

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Strong hits

Sequence:  jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018
Domain Number 1 Region: 2026-2281
Classification Level Classification E-value
Superfamily YWTD domain 3.92e-53
Family YWTD domain 0.0000016
Further Details:      
 
Domain Number 2 Region: 373-633
Classification Level Classification E-value
Superfamily YWTD domain 8.63e-49
Family YWTD domain 0.00000305
Further Details:      
 
Domain Number 3 Region: 1017-1255
Classification Level Classification E-value
Superfamily YWTD domain 3.27e-36
Family YWTD domain 0.0000245
Further Details:      
 
Domain Number 4 Region: 3063-3316
Classification Level Classification E-value
Superfamily YWTD domain 3.79e-34
Family YWTD domain 0.0000176
Further Details:      
 
Domain Number 5 Region: 2290-2462
Classification Level Classification E-value
Superfamily YWTD domain 3.01e-33
Family YWTD domain 0.0000121
Further Details:      
 
Domain Number 6 Region: 684-932
Classification Level Classification E-value
Superfamily YWTD domain 4.45e-31
Family YWTD domain 0.00012
Further Details:      
 
Domain Number 7 Region: 1303-1514
Classification Level Classification E-value
Superfamily YWTD domain 1.12e-21
Family YWTD domain 0.00046
Further Details:      
 
Domain Number 8 Region: 274-363,634-677
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000408
Family Growth factor receptor domain 0.014
Further Details:      
 
Domain Number 9 Region: 1977-2024
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000179
Family EGF-type module 0.0056
Further Details:      
 
Domain Number 10 Region: 1601-1642
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000668
Family LDL receptor-like module 0.00091
Further Details:      
 
Domain Number 11 Region: 198-237
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000668
Family LDL receptor-like module 0.00079
Further Details:      
 
Domain Number 12 Region: 1767-1806
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000111
Family LDL receptor-like module 0.00095
Further Details:      
 
Domain Number 13 Region: 1852-1893
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000236
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 14 Region: 2-37
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000249
Family LDL receptor-like module 0.00059
Further Details:      
 
Domain Number 15 Region: 2628-2666
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000262
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 16 Region: 76-117
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000432
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 17 Region: 2800-2838
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000524
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 18 Region: 2587-2627
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000681
Family LDL receptor-like module 0.00074
Further Details:      
 
Domain Number 19 Region: 936-978,1260-1299,1508-1567
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000126
Family Growth factor receptor domain 0.019
Further Details:      
 
Domain Number 20 Region: 2548-2588
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000157
Family LDL receptor-like module 0.0018
Further Details:      
 
Domain Number 21 Region: 2758-2797
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000034
Family LDL receptor-like module 0.00078
Further Details:      
 
Domain Number 22 Region: 1947-1985
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000059
Family EGF-type module 0.024
Further Details:      
 
Domain Number 23 Region: 36-74
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000106
Family LDL receptor-like module 0.00096
Further Details:      
 
Domain Number 24 Region: 2844-2881
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000131
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 25 Region: 1564-1602
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000223
Family LDL receptor-like module 0.00072
Further Details:      
 
Domain Number 26 Region: 2976-3035
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000321
Family EGF-type module 0.011
Further Details:      
 
Domain Number 27 Region: 163-197
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000406
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 28 Region: 1895-1937
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000406
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 29 Region: 1678-1723
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000055
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 30 Region: 2931-2967
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000733
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 31 Region: 2510-2546
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000262
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 32 Region: 2714-2753
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000275
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 33 Region: 1722-1764
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000288
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 34 Region: 2887-2921
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000406
Family LDL receptor-like module 0.0026
Further Details:      
 
Domain Number 35 Region: 2669-2711
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000654
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 36 Region: 246-282
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000851
Family LDL receptor-like module 0.0024
Further Details:      
 
Domain Number 37 Region: 1641-1683
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000013
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 38 Region: 120-156
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000183
Family LDL receptor-like module 0.0021
Further Details:      
 
Domain Number 39 Region: 3375-3408
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000307
Family EGF-type module 0.011
Further Details:      
 
Domain Number 40 Region: 1809-1853
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000038
Family LDL receptor-like module 0.0021
Further Details:      
 
Weak hits

Sequence:  jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018
Domain Number - Region: 2470-2509
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000637
Family EGF-type module 0.03
Further Details:      
 
Domain Number - Region: 3324-3360
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0297
Family EGF-type module 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018
Sequence length 3765
Sequence 
VTCASNKYQCNNGRCISEVWLCDGDNDCGDMSDEKNCPEKTCRPDEFRCNNSLCISQALV
CDTDNDCGDSSDEGEFCTNHKCQPGFFQCDNKRCIPDHLVCNGGLDCFDESDEYDCPALN
CTGRRWTCKTVRQCISRKYQCDGVDDCTDASDEEDCATRAPDECHDNEFKCTVGGCIPET
WKCDGQEDCEDGSDEPSTCATPTCYSGRFRCNNGRCIFHGWVCDGDDDCGDNSDEAQSLT
CAPPPFSCPSGEWECPGTRVCINITSVCDGSIDCPQGHDESPVCNSESCRLENGGCSHRC
IQTPRGAECFCPEGQELNDTKICQDKNECDPPGICSQTCINTKGSYKCQCDEGYSLLPDK
KTCQASRNTSEVFLLVATRKTIIRSSLDAWMYKSLPLVNQRSLSAIDIDVATGHIYYSDT
GLKKIFRATYNGTDITEIISTGVDVIEDIAVDWIARNIYWTDYRMETVEVADIDGNERVV
LISTNITNPRGIEVDPRDGLRYLFWSDWGQNPKIERVGLDGSSRVAIVTDKIYWPNALTL
DYPNKRLYFADARLDFIDYCNYDGSGRHRMFSNDHFLRHPHALTIFEDRIYWTDRAANRI
SRCNKFNCTERTVMASNIARPLGIVAYHSVRQPIGSNSCEKKPCSHLCLLSPTSELGYKC
LCPVGFKMDATSHVCKQASEVVLLYMQPRMISGIKPDSKGKPSMIPVTSLVDGLDFDYDS
REGFIYYIEKENGSLRRIQINGQNASEFVPTAVIGQPNALAIDWLSNNLYWANEDMSTIE
VMKMTGEKHYRKILISNNGKETDVAAPLSICLDPVQGKLYWSDKGGNGVPAKIGVMNMDG
TKSKVLVSTDIRVPQYLTIDINNQALYWSDSFHQDTDSEPKSPGGLTVYKNRLYYTDSDY
EAIYEANFSNLTHPTQVKNNLPKLQSLKIYYDRHDSGSNGCSDNYGGCSQLCLPIGVNKQ
KKCDCGIGFVLQSNGDCQESNSFLLISQYKKLRGFGLSEQNPQEAMVPVGGEGRAISKIE
VIMKFGYIYWTDLNPGDKINKAASTLNRIKADGSEFQVVIKSGVGTNGIQGIAIDWLAGN
LYFTNAFTIETFIEACRLDGSYRRVIIREPQGRPRSIAVDPIKRYIYWADYGQHPKIERA
NLDGSNRTTLVSNGISFPRDIAVDIITHDVYWVDSVVDALQSISYNGENRQYIKINLPNP
FGVAVYGDWIYWVDRNLKKIFKGRKTKRSNDSIIVVKSDLPELRDVKIFDDSIQPKGESP
CINNNGGCDQLCFALPNKDDPTCVCASGKLDTDGKSCTAPSDFLIYAAENEIRGISLDLK
NMAAPIPPITGLRGAVAVDFDAKTQYIYFSQVGGKKISQVKKGSVKVEDILDNDINSTLS
NHDITSVEGMAFDWVSKRLYWADLFKKRIYSMGIDKSNKIELAVVNSPRAVAVDPCSGDR
IERSNIHGMYREIIIQTTVHPFSLTIYKQYIFWTDWTLRGVFRAEKHTGSDMKMLIQGIS
ARPMGIVVFSPDRQKCDDNPCAKFNGGCSHGCHPSPKGEPECSCQEGSGLVLGKDGKMCI
PENHNCTSTQFVCENGRCLIQRWVCDMDDDCRDNSDENPNHCALHTCDPTHFRCNNGRCI
PLRYRCDFDDDCRDNSDEFDCPYPTCGPDQFSCLNFRCIDKGQVCDGVDNCRDGNKTDEM
NCPPRVCPSNQVKCPNTNICIVRRYMCDGDDDCGDNYDENPLFCNQVTCAAGDFYCTETH
KCIPGAWHCDGENDCGSNEDESEYCSFNNRTCFGNQFTCDSGKCISSRWVCDGTDDCGDN
SDEADTLNCAERTCQPDTFTCESNKQAGSYPCIDRRRVCDGVRNCIGGEDEMQSCPVRSC
QPNQFQCTNGICISLRFYCDLDNDCGDNSDEPDQCVTPEPTCAGNEFRCDSGDCVSYNVV
CNKNPDCSDESDEKHCHIDECEKTEINQCEHECVDTLTSFHCECHTGYRLMSDRKACQDI
NECTDVPGACSQICENTEGSYKCKCTEGYQRQADGISCKKIDNIKPWLVFANRYYVRELS
TDGQNYRRVAQGFDNVVALDFDVKEDRLYFTDVKAHKIYRIYLNGTGQEVIIQHNVPSAE
GLSVDWIGRKLYWVDGRKSSLNVAELNGTNRCTLLKSQMRRPRAIVVDPVHGYIYWTDWG
VKSSIGRVGMDGSNATVDFVTNKMGWPNALTIDYDTGRLWWADAHLDIIEYINIDGSGRH
TVLQGVPHPFAITVFEDWMYWTDWNHLSIEKANKYTGANHTILRNITHRPMDIHVYHPLR
QKVEYFLYFRKLYWVDGRKSSLNVAELNGTNRCTLLKSQMRRPRAIVVDPVHGYIYWTDW
GVKSSIGRVGMDGSNATVDFVTNKMGWPNALTIDYDTGRLWWADAHLDIIEYINIDGSGR
HTVLQGVPHPFAITVFEDWMYWTDWNHLSIEKANKYTGANHTILRNITHRPMDIHVYHPL
RQKVGSRGSPCGKNNGGCSHVCLIGAGGDNYACKCPDFFVMTPDNKTCIANCSSSQFRCG
PTDDRCVPLLWKCDGDKDCKDGMDEPEDCPVKVCAPGQFQCKNNNCTFVFRVCDLHDDCG
DGSDEENCNTRQCESWQFKCNNYKCIPKKWQCDGEDDCGDGSDELSHSCGNSTCSVGQFM
CDNKRCIPATWKCDFDDDCGDGSDEKTSFNCESRSCLTGWWKCKTNYRCVPNWSRCDGED
DCRDNSDELEENCPVCHPTGDWKCANRKCIPKRWLCDFDDDCGDNSDEASDTCADKLRSC
SESEFRCDNKKCIQGKWRCDHDNDCGDGSDEDPQYCTKFKECDKDQFQCSSGHCISLNTI
CDGARDCFDASDEQNCTAPYPGNKFCPDSKFECANHICISTNWKCDGDNDCGDDSDETAE
VCKSVDCEDAGKFQCDNFKCIPKFKICDEINNCGDGSDENKPGLCKVQSNRICTEKEFKC
TNRNCIEGTRVCDNVDDCGDRSDEDGCNKDSDDSSCSKENGGCAQNCTSLKDGGYYCSCK
PGYQIGREDRKSCEDINECDRWGNNCPQKCQNIKGTYKCQCAEGFRDRQRKGTECKASDG
SLIIFFGIGGAIQQYRSSTKEYTNAILKSQRVQSIDVDVAWNLIFWTDKSEKKIKRATLP
PDATVSGVARTIVSFDVKQPEGIAVDWVGKNIYWADSLKKTISVAKNDGRYTRSLIATDL
DYPMGVAVIHDWDASENKPKIEYSWMNGDQRKVLVNSNLVYPTGITIDYFMNDRIYWCDY
KSNVIETMKYDGTDRHIVIKKGIYKPFNIDVFESMLYWSSRDEGRIIKMNKFGKGTNSTL
QTGLLLPTGVKVFHKKRSDLAVKNNCSDSSCSHLCLLTPVGFTCACPQGSSALPSNQNIC
DAPQEKPQSKPMTCDCRNGGTCVGTENIGFTCKCLEGYIGDFCEIAPVRVLESENLTSVI
IPVVVVIIIIILLVVVFVILRKKGILLSFKKFLPKGSNDMKKFRGIAQYNEAGDVNLKLP
YVTGGKPSTSNAPPDDILQDPTKPTNFCNPIILLSFKKFLPKGSNDMKKFRGIAQYNEAG
DVNLKLPYVTGGKPSTSNKNSRRSVDVKMQEDGSSSVGTYSTIRSIFTDNGASFYCPGSH
SVVTSGSFVSACESLQDRLHALDLSTDHNLRNSVIVKEFLFKGKSWDGRHSEDRPLGYGF
HSADRALRYGFHNERALGYGFHNERALGVGLHHSEFIALGYEFHSEGRALGVEYGEEILD
YSDILKKLLRKRPDSFCCEFLDDRDLGDVVKTEIENKIRFCLQRN
Download sequence
Identical sequences V3ZIN0
XP_009067103.1.39240 jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.