SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|410479699|ref|YP_006767336.1| from Leptospirillum ferriphilum ML-04

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|410479699|ref|YP_006767336.1|
Domain Number 1 Region: 191-405
Classification Level Classification E-value
Superfamily Restriction endonuclease-like 4.02e-62
Family Type II restriction endonuclease catalytic domain 0.000000693
Further Details:      
 
Domain Number 2 Region: 5-164
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 3.22e-43
Family Type II restriction endonuclease effector domain 0.0000547
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|410479699|ref|YP_006767336.1|
Sequence length 425
Comment hypothetical protein LFML04_2184 [Leptospirillum ferriphilum ML-04]
Sequence
MALADLADWLDEQSRRETLWFAKRLSANDTLANNAHQAGPYIPKNILFTLFPSLDRPEDK
NPEVRFRLQIDSHQGERREIRAVWYNNRRRGKTRDEARITGFGGRSSPFLDPENTGALML
LVVPPGDNTQTSICRAWVCRNPSEEDLLEDLIGPVEPGKGFLWAPEVPVGKDLVVPPPKE
RSRCWLLENEIPEEWFKKFPSGAEIIKKTLEFRPLHGEIPDKRLLKRRECEYEIFQSVEE
AIELPVIRRGFSSVSEFVDRAQTILQRRKSRSGKSLELHLKEIFLEDGLSEGRDFSCQAE
SEPGKRPDFIFPSEAAYRDPSFPSEKLRMLAAKTTCKDRWRQILNEADRIQVKHLLTLQD
GVSENQFREMSESGVQLVVPKSLHDSYPPNIRQNLLTLKDFIYELRVWQAFSQNGGESIA
AEDEP
Download sequence
Identical sequences J9ZE30
WP_014961880.1.28679 gi|410479699|ref|YP_006767336.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]