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  Home > Genomes > Pediculus humanus corporis > vb|PHUM287180-PA|EEB14212.1|Spectrin

Domain assignment for vb|PHUM287180-PA|EEB14212.1|Spectrin from Pediculus humanus corporis

Domain architecture

Domain assignment details

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Strong hits

Sequence:  vb|PHUM287180-PA|EEB14212.1|Spectrin
Domain Number 1 Region: 34-270
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.11e-86
Family Calponin-homology domain, CH-domain 0.00000381
Further Details:      
 
Domain Number 2 Region: 291-411
Classification Level Classification E-value
Superfamily Spectrin repeat 1.14e-34
Family Spectrin repeat 0.0000716
Further Details:      
 
Domain Number 3 Region: 629-747
Classification Level Classification E-value
Superfamily Spectrin repeat 5.16e-31
Family Spectrin repeat 0.0000957
Further Details:      
 
Domain Number 4 Region: 2187-2297
Classification Level Classification E-value
Superfamily PH domain-like 3.56e-29
Family Pleckstrin-homology domain (PH domain) 0.0000561
Further Details:      
 
Domain Number 5 Region: 1855-2006
Classification Level Classification E-value
Superfamily Spectrin repeat 5.23e-28
Family Spectrin repeat 0.0022
Further Details:      
 
Domain Number 6 Region: 1215-1368
Classification Level Classification E-value
Superfamily Spectrin repeat 6.02e-28
Family Spectrin repeat 0.00077
Further Details:      
 
Domain Number 7 Region: 1427-1576
Classification Level Classification E-value
Superfamily Spectrin repeat 7.92e-27
Family Spectrin repeat 0.00036
Further Details:      
 
Domain Number 8 Region: 1745-1899
Classification Level Classification E-value
Superfamily Spectrin repeat 2.54e-26
Family Spectrin repeat 0.002
Further Details:      
 
Domain Number 9 Region: 1532-1674
Classification Level Classification E-value
Superfamily Spectrin repeat 6.28e-26
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 10 Region: 1131-1250
Classification Level Classification E-value
Superfamily Spectrin repeat 3.66e-24
Family Spectrin repeat 0.00041
Further Details:      
 
Domain Number 11 Region: 1000-1119
Classification Level Classification E-value
Superfamily Spectrin repeat 3e-23
Family Spectrin repeat 0.00032
Further Details:      
 
Domain Number 12 Region: 742-845
Classification Level Classification E-value
Superfamily Spectrin repeat 6.19e-23
Family Spectrin repeat 0.00037
Further Details:      
 
Domain Number 13 Region: 375-520
Classification Level Classification E-value
Superfamily Spectrin repeat 2.22e-22
Family Spectrin repeat 0.00034
Further Details:      
 
Domain Number 14 Region: 895-1011
Classification Level Classification E-value
Superfamily Spectrin repeat 3.02e-20
Family Spectrin repeat 0.0027
Further Details:      
 
Domain Number 15 Region: 523-634
Classification Level Classification E-value
Superfamily Spectrin repeat 4.84e-18
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 16 Region: 1639-1742
Classification Level Classification E-value
Superfamily Spectrin repeat 7.34e-18
Family Spectrin repeat 0.0033
Further Details:      
 
Domain Number 17 Region: 1987-2070
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000000000000615
Family Spectrin repeat 0.0014
Further Details:      
 
Domain Number 18 Region: 1377-1439
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000712
Family Spectrin repeat 0.001
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) vb|PHUM287180-PA|EEB14212.1|Spectrin
Sequence length 2332
Comment beta chain, putative|DS235271.1:1126302:1141016:-1|gene:PHUM287180
Sequence 
MTTDISVVRWDQTLPQDLTQEIVEYDGGNSSSRLFERSRIKALADERESVQKKTFQKWVN
SHLVRVSCRIGDLYVDLRDGKMLLKLLEVLSGERLPRPTKGKMRIHCLENVDKALQFLRE
QRVHLENMGSHDIVDGNPRLSLGLIWTIILRFQIQDITIEETDNQETKSAKDALLLWCQI
KTAGYPNVNVRNFTTSWRDGLAFNAIIHKHRPELIQFEKLSKNNAIYNLNNAFNVAEDKL
GLTKLLDAEDVYVDQPDEKSIITYVVTYYHKFSKIKQDNVQGKRIGKVVRIAMDNEKMIH
EYETLTSDLLKWIEKTIAQLGDRQFANSLHGVQQQLLQFNSYRTVEKPPKFVEKGNLEVL
LFTLQSKMRANNQKPYTPREGKMISDINKAWERLEKAEHERELALREELIRQEKLEQLAA
RFNRKASMRETWLSENQRLVSQDNFGLDLGAVEAAAKKHEAIETDIFAYEERVQAVVAVS
QELEAENYYDINRINARKENVLRLWSYLLELLRARRSRLELSLQLQQNFQEMLYILDSME
ELKMRLLSDDFGKHLMGVEDLLQKHSLVEADINVLGERVKAVVLQSQRFLDQETLEGYKP
CDPTVIVDRVQQLEDAYGELVNLAVERRKRLEESRQLWQFYWDMADEENWIKEKEQIMMN
GDIGHDLTTINLLLSKHKALENEIASHEPQLMSVVSIGEELVNRDHFGATRVRDRLQEIL
GMWQHLSDLAALRRKRLEEAVDYHQFFADADDVDIWMLDTLRLVSSEDVGRDEANVQSLL
KKHNDVAEELKNYEATIAALKNQASQLGEHDKQSPEVLDRLSSIDHRYKELLELSKLRKQ
RLLDALSLYKLFSESDGDRMLLTMVPAKDIEDVEIMKHRYDGFEKEMNANASRVAVVNQL
ARKLLHVEHPNSEQIMAKQNQLNHKWAELREKAEAKRDELGSAHGVQTFHIECRETLSWI
EDKKRILQETDSLGMDLTGIMTLQRRLSGMERDLAAIQAKLDSLEKEAEAINKDHPEEAE
VIRGRIKQIKVIWEQLTQMLKERDAKLEEAGDLHRFLRDLDHFQTWLKKIQTDVASEDTP
SSLPEAEKLLNQHQSIREEIDNYRQDYLKMMEYGERITAEPSTQDDPQYMFLRERLKALK
DGWEELHQMWENRQQLLSQSLNLQMFNRDAKQAEVLLNQQEHVLSKDDTPANLEQAENLI
KRHEAFLTTMEANDDKVNAVVQFAARLCDEGHFDSDKIHKKAENLNDRRNANRDRAILMM
NKLKDQLMLHQFLQDCEELGEWIQEKNLTAQDDTYRSAKTVHSKWTRHQAFEAEIGANKD
RLLRIKQVSTQLIKEKPELADIVKPKIGELLQQFDNLEKTTKDKGERLFDANRETLMYQT
CDDIDSWMNELEKQIESDDTGSDLASVNILMQKQQMIETQMAVKAKQVSDLESQAEYLQK
TVPEKMDDIVTKKAKVEERFQQLKQPLLERQRQLEKKKEAFQFRRDVEDEKLWIGEKMPQ
ATSSDHGTSLFNVHMLRKKNQSLKTEIENHEPRITLVCNNGQKLIDENHEDSPEFEKLIA
DLKRKYQELKEAVDSREKDLKQNEKVQQYFFDTNEAESWMSEQELYMMVEDRGKDEISAQ
NLMKKHETLELAMEDYADTIRQLGETARQLINDRHPLSDQISVKQSQVDKLYAGLKDLAG
ERRAKLEEALQLFMLNREVDDLEQWIADREVVAGSHELGQDYDHVTLLWERFKEFARDTE
SIGSERVAAVNQMADGLISAGHSDSATIAEWKDGLTEAWQDLLELIETRTQMLQASRELH
KFFHDCKDVLGRIMEKHHSMSDELGRDAGSVSALQRKHQNFMQDLMTLQSQVLTIEDESN
RLQASYAGDKAREITNREAEVASAWAILQALCEARRNKLADSGDLFKFFNMVRTLLLWMN
DVFRQMNTSEKPRDVSGVELLMNNHQSLKAEIDAREDNFSACISLGKELLSRNHFASNEI
KEKLLMLTNRRNSLLQRWEERWENLQLILEVYQFARDAAVAEAWLIAQEPYLMSTELGHT
IDEVENLIKKHEAFEKSASAQEERFSALEQIIFYSDKFYKPDRGKKRSWKNRKPPRRRRR
IRSFLWKNDRDWNEKLKNVFFSSEEVGDSKCCDTKLFLNNERKLFENENKMYDLSGGQND
KVSDSSLPPLPLPDPMEFISIYREVYELLEGMLQRKHEWESTTKKASNRSWDKVYVVMKG
PQLSFYKDAKSYKAAPDVCLKNEQRLDLKNGFIEVALDYTKKKHVFRLKTASGAELLFQA
KDDEEMNQWVSAMGAQCEGGAAAAGPGKSQTLPAGPGQSEQKKRSFFTLKKK
Download sequence
Identical sequences E0VLF6
XP_002426950.1.24195 vb|PHUM287180-PA|EEB14212.1|Spectrin 121224.XP_002426950

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.