SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCSAVP00000018658 from Ciona savignyi 69_2.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCSAVP00000018658
Domain Number 1 Region: 11-375
Classification Level Classification E-value
Superfamily Cullin repeat-like 8.63e-89
Family Cullin repeat 0.0000318
Further Details:      
 
Domain Number 2 Region: 393-660
Classification Level Classification E-value
Superfamily Cullin homology domain 8.37e-63
Family Cullin homology domain 0.0000143
Further Details:      
 
Domain Number 3 Region: 681-767
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 2.58e-20
Family SCF ubiquitin ligase complex WHB domain 0.0027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCSAVP00000018658   Gene: ENSCSAVG00000010962   Transcript: ENSCSAVT00000018861
Sequence length 768
Comment pep:known reftig:CSAV2.0:reftig_9:3022944:3032212:-1 gene:ENSCSAVG00000010962 transcript:ENSCSAVT00000018861 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSMLVGTEQTFDEKWPTMQPIILKLLSQQSVTRQEWQDLFWDVHSVCLWDNQVGPEKVHT
ALKNNISSFIKGAQQRIKAHHEGNALLRAYIVEWRKFFDQCVYLPEPFTQLEKSLSGSHA
KKKKQEQNTIVRKLMLDSWSKNIFSDIYGLLKERTMELIKHEREGGDLDAQLVIGVRQSF
VNLCPNPDDPIQIYREHFESAYIDSTEEHYKSEAENYLAEHGVRKYMAYAYQKLLEETQR
GTRYLESSSMTRLNERCVAVLATKFKDSILAECKRMISENEMNQLYLMFNLMNRVPNGVD
PMLDCLQEHIVQEGLADMRGCCDVITTDSEKYIELLLSLFNRFSDLVKRSFDDDPRFLTA
RDKAFKHVVNDYSVFNIELQTKAKQNPIKLPPESRCPELLANFCDMLLRKTPLSKKLSSE
EVDSKLKDVLLVLKYVSNKDVFMRYHKAHLTRRLILGTSADSEKEENMVEGLREVGMPAD
YVNKLARMFQDIKVSEDLNIQFEEARDDRVSELANIKILNAGAWSRRSDRIPVSLPTILE
DLIPDVEDFYKSKHHGRMLNWNHLMSNGVMTFKTEMGSFDIEVTTFQMSVLHIWNSRPTE
SISFEGLKLATQLPDTELRKTLWSLVANPKLKRQVLLCEPKISSPKDFQEGSMLSVNHQF
AIMKAGKPQKRGRANLIGRLQLSTDKSREEDNEGITQLRILRTQEAIVKILKMRKRINNA
QLQTELVEILKNLFLPQKKLIKQQIEWLIENKYMKRDDNDINTFIYIT
Download sequence
Identical sequences H2ZM42
ENSCSAVP00000018658 51511.ENSCSAVP00000018658 ENSCSAVP00000018658

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]