SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Capca1|42946|gw1.216.27.1 from Capitella sp. I

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Capca1|42946|gw1.216.27.1
Domain Number 1 Region: 562-667
Classification Level Classification E-value
Superfamily SRCR-like 7.06e-31
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00041
Further Details:      
 
Domain Number 2 Region: 1-95
Classification Level Classification E-value
Superfamily SRCR-like 9.02e-30
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0002
Further Details:      
 
Domain Number 3 Region: 226-331
Classification Level Classification E-value
Superfamily SRCR-like 1.31e-29
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00047
Further Details:      
 
Domain Number 4 Region: 344-453
Classification Level Classification E-value
Superfamily SRCR-like 8.24e-29
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0005
Further Details:      
 
Domain Number 5 Region: 107-218
Classification Level Classification E-value
Superfamily SRCR-like 6.28e-26
Family Scavenger receptor cysteine-rich (SRCR) domain 0.00056
Further Details:      
 
Domain Number 6 Region: 457-559
Classification Level Classification E-value
Superfamily SRCR-like 2.35e-21
Family Scavenger receptor cysteine-rich (SRCR) domain 0.0017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Capca1|42946|gw1.216.27.1
Sequence length 670
Sequence
LRLVGGLGPYEGRVEVLNKGQWGTICDDGWSDLDASVVCKQLNYTRAFFGAGSGPVWMNN
VNCDGIERHLGLCGQTEFSSSSHVCQHDEDAGVTCDVDSLDQSSIDVKLRLSGGPSPRVG
RLEIFYNGTWGSVCEDGFRDREAVVACRSLGFELAEVSYGRNWDGQYAPSEGPVWLDRGL
ECLGMEQNIALCEHSGWGQSNCDYTGDVILSCLDVTPTPPPPQALIVRLVGGPSAQEGRL
EVLYRGAWGTVCDDDFDALDAAVFCRMLGFNGTARYMEQAYGPGDDDSPVWLDDMQCKGN
ETSAEECVFSGLEEIVHCWHSEDVSIACLPQSEQTDSAEMTTTPSLSLRLQDGPNAMEGR
VEVLYNGTWGTVCDDDFGDEDASVVCSMLGYIFGGEPLGSLYGPANDSVPIWLNEVECEG
GESLLTQCAFLGLDRGDPECNHDQDVSLRCFSDPAATPLRLHGGATEADGWLEIYHDGRW
GRICGDFGTRGAQVACNSLGLSGNALVVKDKESTANEKFPTWLTDVECSGQESSLLDCEH
PEYDESSCWDHDDDAYVQCGADLVPLRLEGGSHPGEGRVEVFFQGVWGTICNEDFDDEDA
QVVCRSLGLSVSEARELTFSNIAIGEGQIWLESLDCLGSESNVMQCNHDGWGQHNCYHHE
DVRVSCGSPS
Download sequence
Identical sequences R7USM6
jgi|Capca1|42946|gw1.216.27.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]