SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Capca1|187714|fgenesh1_pg.C_scaffold_578000002 from Capitella sp. I

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Capca1|187714|fgenesh1_pg.C_scaffold_578000002
Domain Number 1 Region: 17-178
Classification Level Classification E-value
Superfamily Pentapeptide repeat-like 4.16e-22
Family Pentapeptide repeats 0.0062
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|Capca1|187714|fgenesh1_pg.C_scaffold_578000002
Sequence length 196
Sequence
MCLVFESKKTHGEGGATFCGGEVGGATFCGGELGGATFCGGELGGATFCGGELGGATFCG
GELGGATFCGGELGGATFCGGEAGGATFCGGEVGGATFCGGELGGATFCGGEVGGATFCG
GELGGATFCGGELGGATFCGGELGGATFCCGELGGATFCGGELGGATFCCGELGGATFCG
VGGGGPGCPNRLSFLS
Download sequence
Identical sequences R7TMB4
jgi|Capca1|187714|fgenesh1_pg.C_scaffold_578000002

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]