SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|317133008|ref|YP_004092322.1| from Ethanoligenens harbinense YUAN-3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|317133008|ref|YP_004092322.1|
Domain Number 1 Region: 5-108
Classification Level Classification E-value
Superfamily N-utilization substance G protein NusG, N-terminal domain 1.24e-38
Family N-utilization substance G protein NusG, N-terminal domain 0.0000739
Further Details:      
 
Domain Number 2 Region: 116-171
Classification Level Classification E-value
Superfamily Translation proteins SH3-like domain 9.89e-17
Family N-utilization substance G protein NusG, C-terminal domain 0.003
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|317133008|ref|YP_004092322.1|
Sequence length 173
Comment NusG antitermination factor [Ethanoligenens harbinense YUAN-3]
Sequence
MSENAKWYVVHTYSGYENKVASNLQTIVENRSLQDVIQEIKIPTEMVTEIKDNVKREVER
KTFPGYVLVKMELNDDTWHIVRNTRGVTGFVGSGSHPEPLTEKEVEALGMDKRTVEVNYA
VGDSVRIVDGPLDGFIGTVDTLDTDKNQVTVTVSMFGRETPVELELGQVEVIQ
Download sequence
Identical sequences E6U3J1
gi|317133008|ref|YP_004092322.1| WP_013485939.1.100024

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]