SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLAFP00000019891 from Loxodonta africana 69_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLAFP00000019891
Domain Number 1 Region: 104-266
Classification Level Classification E-value
Superfamily C-type lectin-like 4.05e-19
Family C-type lectin domain 0.0061
Further Details:      
 
Domain Number 2 Region: 25-67
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000367
Family LDL receptor-like module 0.0012
Further Details:      
 
Weak hits

Sequence:  ENSLAFP00000019891
Domain Number - Region: 265-330
Classification Level Classification E-value
Superfamily FnI-like domain 0.000889
Family VWC domain 0.054
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLAFP00000019891   Gene: ENSLAFG00000026369   Transcript: ENSLAFT00000027933
Sequence length 538
Comment pep:novel supercontig:loxAfr3:scaffold_140:640512:796628:-1 gene:ENSLAFG00000026369 transcript:ENSLAFT00000027933 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGAIQCIPLPWQCDGWATCEDE
SDEADCPEVTGEARPYHGKEAVDPRPGRARGSDPTHFHAVNVAQPVRFSSFLGKCPTGWH
HYEGTASCYRVYLSGENYWDAAQTCQRVNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
QHKLWVGYQYVITGRNRSLEGHWEVAFKGSSEVFLPPDPIFASAMSENENVLCAQLQCFH
FPTLRHHDLHSWHAENCYEKSSFLCKRSQTCVDIKDNVVDEGFSFTPKGDDLCLSCTCHG
GEPEMCVAALCERPQGCQQYLKDPKECCKFMCLDPDGSSLFDSMASGMRLIVSCISSFLI
LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGK
GTFHFHDPPPPYTAYKYPDIDQPDDPPPPYEASINPDSVFFDPADDDAFEPAEASPPVLG
DSSSDGASPRHLEQSLPSVGAPLADLEDSADSSSALLVPPNPTQNECTPMAEALLGGG
Download sequence
Identical sequences G3TWD3
ENSLAFP00000019891 ENSLAFP00000019891

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]