SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|78778179|ref|YP_394494.1| from Sulfurimonas denitrificans DSM 1251

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|78778179|ref|YP_394494.1|
Domain Number 1 Region: 111-535
Classification Level Classification E-value
Superfamily C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 7.72e-62
Family C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.0000154
Further Details:      
 
Domain Number 2 Region: 6-104
Classification Level Classification E-value
Superfamily Cytochrome c 6.84e-18
Family N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 0.039
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|78778179|ref|YP_394494.1|
Sequence length 546
Comment nitrite reductase NirS [Sulfurimonas denitrificans DSM 1251]
Sequence
MRLNKLVLSVAATAVVGSGMLVQAAGFDAESVFEKECQGCHGPNLEGGVGSDLRPAVTAK
KNSYELAETILNGKAGTAMPSFKDKISKDDADKMVDYIQHFKGRVIKQLTLDTVKAAWKP
LNDRMAFFTKYPNAVDVKKNTDICFVTERDAERVAFVDGTSGKILSKHPAGFAVHVTVTN
KRQPRYAYSISRSGLVTMFDLNTPGQQKIAEVQVGSDSRGLAVSPDGKYLMAGNYVPGGA
ILLDAMTLEPLKVYPTSSVIKPNGDIDSSRVAGIFDTPYGPYFAFALKDGGHVYIVDYSK
PTFPIVGDIPNIGDILHDGFLNEGKEIGRYLFIASQGSDVVGVVDFKTKSLVTKIYTGPA
SKPHPGQGSSWYNETLGQQLGATVNMNLGQVTIWDDHFDVIRQIPTGGGGLFVGTSEHTP
FIWADNVLGGSDVWNQVHLINKQTLELDRIITVGTSEGTVTDPVTHKVLYKWEVPTVKDD
KGAAITPRILHAEPANHGHWTMISEWNAGRIGIYEAKTGKFVKYITGLTTPTFTYSIEHR
QTIPGA
Download sequence
Identical sequences Q30P22
gi|78778179|ref|YP_394494.1| WP_011373599.1.32152 326298.Suden_1985

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]