SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLAFP00000003953 from Loxodonta africana 76_3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLAFP00000003953
Domain Number 1 Region: 24-466
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 1.11e-73
Family Integrin alpha N-terminal domain 0.00000204
Further Details:      
 
Domain Number 2 Region: 794-1018
Classification Level Classification E-value
Superfamily Integrin domains 2.09e-54
Family Integrin domains 0.00043
Further Details:      
 
Domain Number 3 Region: 466-627
Classification Level Classification E-value
Superfamily Integrin domains 1.2e-30
Family Integrin domains 0.001
Further Details:      
 
Domain Number 4 Region: 629-791
Classification Level Classification E-value
Superfamily Integrin domains 1.26e-27
Family Integrin domains 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLAFP00000003953   Gene: ENSLAFG00000004724   Transcript: ENSLAFT00000004727
Sequence length 1092
Comment pep:known_by_projection supercontig:loxAfr3:scaffold_3:54791382:54875037:-1 gene:ENSLAFG00000004724 transcript:ENSLAFT00000004727 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAAAGQLWLLYLSAGLLSLLCAAFNLDTREDYVIQKLGDPESLFGFSLAMHWQLQPEDKR
LLLVGAPQAKALPLQRANRTGGLYSCDITSQEPCTRIEFDNDADPSSESKEDQWMGVTVQ
SQGPGGKVVTCAHRYEKRQHVNTKQESRDIFGRCYVLSQNLRIEDDMDGGDWSFCDGRLR
GHEKFGSCQQGVAATFTKDFHYIVFGAPGTYNWKGIVRVEQKNNTFFDMNIFEDGPYEVG
GENNHDESLVPVPANSYLGFSLDSGKGIVSKDDITFVSGAPRANHSGAVVLLKRDMKSTH
LLPEHIFDGEGLASSFGYDVAVVDLNKDGWQDIVIGAPQYFDRGGEVGGAVYVYINQQGR
WNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAPYDGMGKVFIYHGSANGINTK
PTQVLKGRSPYFGYSIAGNMDLDRNSYPDVAVGSLSDSVTVFRSRPVINIQKTITVTPDK
IDLSKKMSCAAPSGICLKVKACFEYTAKPTGYNPSIVIVGTLEAEKERRKSGLSSRVQIR
NQGSEPKYSQQLILSRQKQKACMDETLWLQENIRDKLRPIPITASVEIQESGSRRRVNSL
PEIPPILNSNEPKTVHADVHFLKEGCGSDNVCNSNLKLEYKFCTREGSQDKFSYLPIQKG
VPELVLKDQKDIALEITVTNSPSNPRNPTNDGDDAHEAKLIATFPDTLTYSAYRELRSFP
EKQLSCVANQNGSQADCELGNPFKRNSNVTFYLILSTTEVTFDTTDLDINLKLETTSNQD
NLASITAKAKVVIELLLSVSGVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFSVINLG
KPLKNLGTATLNIQWPKEISNGKWLLYLVKVESKGLEKIGCEPPSEINFLKLKESHNSRK
KREIAEKQIDDRRKFSLFAERKYQTLNCSVNVKCVNIKCPLQGLDSKASVILRSRLWNST
FLEEYSKMNYLDILTRASIDVTAAAENIKLPNAGTQVRVTVFPSKTAAQYSGVSWWIILV
AILAGILMLGLLVFLLWKCGFFKRSRYDDSVPRYHAVRIRKEEREIQDEKYNNDNLEKKQ
WIAKWTENESYS
Download sequence
Identical sequences G3SUU1
ENSLAFP00000003953 ENSLAFP00000003953

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]