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Domain assignment for SMAR001758-PA from Strigamia maritima 22

Domain architecture


Domain assignment details

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Strong hits

Sequence:  SMAR001758-PA
Domain Number 1 Region: 1093-1364
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 8.63e-22
Family RecA protein-like (ATPase-domain) 0.097
Further Details:      
 
Domain Number 2 Region: 731-875
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.00000000402
Family Canonical RBD 0.015
Further Details:      
 
Domain Number 3 Region: 2237-2287
Classification Level Classification E-value
Superfamily RING/U-box 0.00000303
Family RING finger domain, C3HC4 0.019
Further Details:      
 
Domain Number 4 Region: 592-670
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.00000668
Family Canonical RBD 0.018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) SMAR001758-PA
Sequence length 2416
Comment pep:novel scaffold:Smar1:JH430794:10693:27089:1 gene:SMAR001758 transcript:SMAR001758-RA description:""
Sequence
MVLGAVIAALNDLAFDLTGYVYVLSNDFFTAANGVYMKKKLESKELGKYGLMFYNCAFAI
IPSTLICWYSGEMTQVMNFNEWSNVNFLVQFFLSCIMGFVLIFSTILCTSFNSALTTTIV
GCLKNIFITYIGMFIGGDYIFSAANFLGLSISVIGSLVYSLITFTETEERSKAKPKTGIS
LADSLVPVVETKSKMDTQVAVMATWRQKSHFTNNTRDVGDLGNQTSTKNTTTGSRPFLNI
SSHLLRNPDNPLDRNKNDKSAQGRPNDIKLLPKNSYEQNRKFSDSAWKQTMIQKLENKQE
LPSGIRNKQLKSKITDSKSNIRDLNKEKVVSKIAEVLFDVFQEDPVAADWNFSESSSDDG
DSSSSISSSIALLTDDEDESNYPQLSQMSLTCGLSQNLSQRVTFSPEADDIKPINVKKQP
NQYLKIGLFWDIENCPVPKEKSVLYFVKKLRDLFFEGYTQDKFIVVCNAYNQPPAITKDL
RDVGVTVEHVSPGKNAADEILRRSIREFSENKIPGTRVVLITGDIDFSPEICEMRYKKHF
DVILIHNKITKEALKISASQCVSFEEFSSDVRNKESTADSVPVLKPVPLLVSVTVVNLPT
RIDVKKLKMRLGQLVDPFGGNVLHIPMPIKEAVVKFVAETDANRAISVLQGEDVFGCKIK
LFLTKSKEDIESDIKFEPGYVKSGSKKEAGIKRKEQDVDSGGFNKDEAVLVTAKNLPYVK
DDVKIKFRLNQLMHSFGGKVLSISPPPKEAMITFSSHSSAHSAIMSLQDQDVFGWKLKLS
MTKSSSGAIETRESIESVQTSVTVVNLPHNMDVKRIKFRLSQLVNPHGGKVLHIPLPVKK
ASVVFSSKVSANRAINVLQNADLFGCKLHLFLAEPMDIDIAQSESKETNVPVANPKTITF
CTERKVALMELKTILNKEIEVFENLSLVSRKDNKYCYSLVCPSLTCARKVSKQLFALKFP
KLYDIQILRNEVDIQQEAPPVKRFDSAEAVKDYYLEQHEVKYGTLKLRMDALIAGDAFKS
SSTLMNDELKMIYNKLRLMDSMKNEFIHASKTILDKSIQPSRQLDEMLIECEYLIKSLPV
YAYRSNITSSVARDQITIVASNPGSGKSIQVIQYIHQMLPADTKNRILCVQPYKQLAYFI
KDQLSKDIAADDSNFYHTLQNQDSKKRILFATDKALLNECFSNPTLNGYSHIIIDNVQLK
SPATEVILAYLRLILPKRRDLKVVILSTLDVSKHLSMYLNASVIEIDTKYFPVEKVEINT
KSEHYIIDCVNKVISVVNNDDNTGNILVFLPNIPVVNQAAQLLARDVQLQSAGVKVYKLL
LELDFQKTYISIEKSKTRCIILTTSELETVVCLNNVNLVLDSGLVTHYSTGSFSNSAETI
YQADNSTNYRSMKCDSVGKLYRFKLTDISSVKNEERSKSTELLVLSVFQLAMKPVLFDFL
YPMVYDEIISATKALEKLKAINDFGITEKGRKMLALPLDIHLASLLVDGIQEGIGFITLC
FCAIASTSQMHKYLSDSSDGVNYNNLIELLGKYLNSPKDIDYDIMTIIADKVVDLEKCLK
SAKYHFDIENKVPFDGMIRLQKLLATSWKENLCVLRKGKYLFECKSNKKMVSLLPHSGAN
DRSPQSILFETLWKFCSVDYATNFIPMDYEVADNKKNQIDLITIKPLGPHIMRTVFVGNK
GQMKTEWEVKLSNIKSKVRFSYNTREGELKVNCNPEVKIRVLNEINKAIATARVSLTNEL
WEFEICKDSGLKIVWGKSAEVLQLLMPKEFLKVVVYASLSEPTSGIIEHFGRYGRIIHDS
EKADMRNNCAKQVVLMYNNPKSAKLALSDENKRYTLKAMMDKTFPDKLPPFTVVKMTWTR
RLNTGTAVVSYNKYLSINAVDSIKERKRNTCFASASMDFEYEEKRIQFRGLKRTISKAEF
EAGVTEMFHGLDLTFSFNLTLEQSFVSNKSEVELKESKLRSVINKIVGNDVITSLRKPEN
VDELWVANLSISDMNIHQDAGNALKRLQVDDCQVFISVRKYCNVYYTEELFLQHKNAFVD
DIKQEERFKRDQNCHLHVTNTTAGNGRIITKFEASKIEDISLVYHILTSKFTGTRITLSS
YAFPEDFPFEIVSLLEEFWKVSSKWNAFIKYKKYANEIVVVGDSEAVHDVQEILQIKEEL
FLSLKPMSYCCNEPPGMLCMLIEKFGSDLKDFQTTIEAVYIKLCIESKTLLIWGGNQRKI
ASEFQIIKSSLETKKKAKPGSQLCPICSDDPLEHENNYRFDYCGHIYCVPCICAVLLNAE
IPLTCAVQGCNAPIVYRDLRNLQTVCPLIVRDLASRATVECDVIYHYGQTCEQFRKTQKL
NVVKSSETANQTTTYPGGVRRQFGARKNENQFSKADSPRLYPYPTNNQRFGSVNSVHSLD
QTEDDYPQEKSVCTMM
Download sequence
Identical sequences T1ILD4
SMAR001758-PA

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