SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|20091347|ref|NP_617422.1| from Methanosarcina acetivorans C2A

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|20091347|ref|NP_617422.1|
Domain Number 1 Region: 161-352
Classification Level Classification E-value
Superfamily L domain-like 0.000000000282
Family Ngr ectodomain-like 0.062
Further Details:      
 
Weak hits

Sequence:  gi|20091347|ref|NP_617422.1|
Domain Number - Region: 52-96
Classification Level Classification E-value
Superfamily PKD domain 0.00275
Family PKD domain 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|20091347|ref|NP_617422.1|
Sequence length 393
Comment hypothetical protein MA2519 [Methanosarcina acetivorans C2A]
Sequence
MRFSNKISGIKFAGLLVIVVLIFCTLEYTSSNSEKSNSSGSLDEKMRTAKPNENITFVTA
GSEFSPIITVTGNPEIQWVFGDGSTSNSTSPTVNFGLRKIRENTLVVTPWSAVTKINIGY
DGADGGVTPGSDTIENLEQQDVIAVTGLENVAPYLQIWASSYNPITSLDFSNFTALHTIE
CFYCTSLNTIRLRNVPYLTRLCLENCNISELDLSEAPSLADLRGASQNNQTYTINWGTTG
ANIWHICVRDNPQMTSLLPVSQFPLIEDFFVWNGNQSGTLHLTSTNLKSVISFNNQYTAA
NLSGCFPAGGECTVNLYDNDLTSLDISNDPGLFYLNVSRNSLNQTAVDGILQTLDSYKTS
GGYVDLTENAAPSRTGVAHASNLTAREWKVQSS
Download sequence
Identical sequences Q8TMX9
gi|20091347|ref|NP_617422.1| 188937.MA2519 WP_011022487.1.98848

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]