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  Home > Genomes > Methanosarcina acetivorans C2A > gi|20092498|ref|NP_618573.1|

Domain assignment for gi|20092498|ref|NP_618573.1| from Methanosarcina acetivorans C2A

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|20092498|ref|NP_618573.1|
Domain Number 1 Region: 1721-1803
Classification Level Classification E-value
Superfamily PKD domain 2.75e-31
Family PKD domain 0.00022
Further Details:      
 
Domain Number 2 Region: 1166-1258
Classification Level Classification E-value
Superfamily PKD domain 3.66e-29
Family PKD domain 0.00039
Further Details:      
 
Domain Number 3 Region: 738-819
Classification Level Classification E-value
Superfamily PKD domain 4.58e-29
Family PKD domain 0.00026
Further Details:      
 
Domain Number 4 Region: 649-735
Classification Level Classification E-value
Superfamily PKD domain 5.1e-28
Family PKD domain 0.00031
Further Details:      
 
Domain Number 5 Region: 974-1175
Classification Level Classification E-value
Superfamily Quinoprotein alcohol dehydrogenase-like 1.41e-27
Family Quinoprotein alcohol dehydrogenase-like 0.0039
Further Details:      
 
Domain Number 6 Region: 112-196
Classification Level Classification E-value
Superfamily PKD domain 3.92e-27
Family PKD domain 0.00046
Further Details:      
 
Domain Number 7 Region: 561-649
Classification Level Classification E-value
Superfamily PKD domain 4.32e-27
Family PKD domain 0.00035
Further Details:      
 
Domain Number 8 Region: 1637-1720
Classification Level Classification E-value
Superfamily PKD domain 3.92e-26
Family PKD domain 0.00016
Further Details:      
 
Domain Number 9 Region: 205-409
Classification Level Classification E-value
Superfamily Quinoprotein alcohol dehydrogenase-like 2.59e-24
Family Quinoprotein alcohol dehydrogenase-like 0.0073
Further Details:      
 
Domain Number 10 Region: 27-108
Classification Level Classification E-value
Superfamily PKD domain 1.57e-22
Family PKD domain 0.00017
Further Details:      
 
Domain Number 11 Region: 829-985
Classification Level Classification E-value
Superfamily Quinoprotein alcohol dehydrogenase-like 5.49e-21
Family Quinoprotein alcohol dehydrogenase-like 0.004
Further Details:      
 
Domain Number 12 Region: 330-558
Classification Level Classification E-value
Superfamily Calcium-dependent phosphotriesterase 1.31e-16
Family All0351-like 0.043
Further Details:      
 
Domain Number 13 Region: 1267-1356
Classification Level Classification E-value
Superfamily PKD domain 0.0000000602
Family PKD domain 0.0022
Further Details:      
 
Weak hits

Sequence:  gi|20092498|ref|NP_618573.1|
Domain Number - Region: 1962-2013
Classification Level Classification E-value
Superfamily Type I dockerin domain 0.00163
Family Type I dockerin domain 0.0098
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|20092498|ref|NP_618573.1|
Sequence length 2016
Comment cell surface protein [Methanosarcina acetivorans C2A]
Sequence 
MKRIFLILCIAALMCMTGLASAAEETVGTVANFTTNTTSGSAPLTVQFTDISTNATSWAW
DFENDGTIDSTDQNPVHTYSTEGIYTVNFTVSNAGGNASEVKTGYISVSEPLPSAPVANF
SADITSGNAPLTVNFTDQSTGTVSSYSWDFENDGVVDSTEQTPSYIYTSAGTYTVNLTVT
NAAGSDSEVKINYITVEGTGTEGLADTAWPKYHYDLNNTGRSPYIGPQTGNVVWTFNAGG
SLQYNSPAIGADGTIYTGSCGTHEFYAINPNGTLKWTFRVGYTWQRFYGSPAIGTDGTIY
TGNRDGNLYALNPDGTLKWSYATANDIFKSPTIGPDGTIYIASCDGYLHAVNPDSTFKWK
VRWQNGNHEDVNLIGSPAIGPDGTIYIGSSSEAVFHAFNPDGTEKWNYTYTTGSTDYISF
YGSPAIGSDGTVYIGNRDSKLFALNPDGTLKWDFSIAQYDQILCAPAIGTDGTLYARSLN
GNFYAIYPNGTLKWSCSVGYSGHGSPVIGADGAVYVINSAGRICALNPDGTLKWDSNIGG
SYCSPAIGSDSTLYVCAGNALYAFRTEAPVANFSAEPTTGDIPLTVQFTDESVKDPISWL
WDFGDGDDTNATMQNPMHTYNAVGTYNVTLTATNIAGNGTESKTGYITVLEAVIPVANFS
AEPTTGDVPLTVRFTDESAKNPTSWLWDFGDGDDTNATMQNPVHTYNAAGTYTVTLKATN
FAGSNAELKTGYITVLEAVTPVANFSADMTSGDVPLTVQFTDESANNPTSWTWDFGDGST
SDQQNPSHRYVFAGNYTVTLTATNAGGSGTGTKTDYITVNAVERIKLADSAWPKFGYDLN
NTGQSPYAGPQSNNVVWTYTAGDNFYIGGSTIGPDGTIYICNADQNLYAFNPNGTLKWSY
NTEGYCYYCTPAIDSDGVIYVGNRNEKLDAINPNGTLKWTSPTGDYVYGSPAIGSDGIIY
VGCRDGNLYALFPDGTLMWTCAVGGRFNYVSPAIAADGTIYAGNYEDNKLYAINSNGIIK
WSYETGGRIYNSPAIAADGTVYVGSYDSNLYAINPDGTLKWNYTTGAQIYGAPSIAADGT
VYIGSYDHNLYAINPDGTLKWNYYADGEFRYSQPVIGVDGTVYIGDSSGKFYGISPGGTL
KWDYTTGGRVYGPASIGSDGTLYIGSYDKKLYAFRDAETPVADFSAVPISGGVPLTVRFT
DESAGYPTSWSWDFGDGENSTAQNPAHIYTASGTYNVTLTITNDAGSDTVEKIDYITVTS
GGSSGESAPIADFNVALYTDDCMPHGTAPITVSFTDNSTGNVSVYIWEYRNLYTGSEWTE
FGSGAQNPTDIEFSDVGTYDIRLTVSNSGGSSNRTIEHALTAGMSHDYLTTIQNGTVSGD
LYIDSRSPWTTTANYSYTLPASGDDIVWARVFVNDYSGSGSGNGALQLKTELDSDGDGTF
ETVLGVEECNIQSDTDQVVYPLNDHVSKVYSDYEAWYDVADLLNSTTPNIRVTASDIGVT
VGSDRGFDGRIKGVTLVVAYNDGDSDEVNYIVNHGNDWMTGSSSTTFDASTFASGWTEAE
IKSVSFSSTDASYTLDGNSIAASSLGSGGYYEFNSFNVTSALTPAASNTFGYTNQGVSFK
ICLAALTVGYGNESAGAPVADFTGTPTSGDAPLTVQFTDNSSGATEWSWDFGDGDDTNAT
EQNPVHTYAAEGNYSVKLTVTNAGGSDDELKTDYITVLEPSTPEPVAMFTADATSGTVPL
TVNFTDQSTGSPTSWFWDFGDGANSTEQNPVHTYSAEGNYTVNLTVENAAGTDFELKTDY
IEVTEASGSTVTLYFDPTSSSVAENESTEISVVASNFPAGLSGYNLTVAIDDPTIAEIID
IEYPSWALITQNSTLPATSIYMKTVDLEDAVKEGAADVVLATLTVSGKEKGSANLSIGVK
RLEEDSGDSIEPALLTGTIEVTLLSPLPDQEYTPRDLDGDGLYEDLTGNGEFSFVDIVAY
FHNMDWIEENMPVEYFDFNGNGRIDFDDVVDMFAMI
Download sequence
Identical sequences Q8TJS9
gi|20092498|ref|NP_618573.1| 188937.MA3698 MvR135 NYSGXRC-10384m

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.