SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSMUSP00000110645 from Mus musculus 63_37 (longest transcript per gene)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSMUSP00000110645
Domain Number 1 Region: 4-75
Classification Level Classification E-value
Superfamily RING/U-box 2.08e-18
Family RING finger domain, C3HC4 0.0000121
Further Details:      
 
Domain Number 2 Region: 103-188
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.00000000000000115
Family Canonical RBD 0.0000113
Further Details:      
 
Weak hits

Sequence:  ENSMUSP00000110645
Domain Number - Region: 192-218
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.0243
Family CCCH zinc finger 0.0089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSMUSP00000110645   Gene: ENSMUSG00000038784   Transcript: ENSMUST00000114993
Sequence length 710
Comment pep:known chromosome:NCBIM37:6:34972066:35083737:-1 gene:ENSMUSG00000038784 transcript:ENSMUST00000114993
Sequence
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPSD
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL
SVQDQPSLSPTSLQNASSHTTTAKGPGSGFLHSAAPTNANSLNSTFSVLPQRFPQFQQHR
AVYNSFGFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSWDSP
GSWTDPAIITGIPASSGNTLDSIQDDNPPHWLKSLQALTEMDGPSAASSQPHHSAPFSTQ
IPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
Download sequence
Identical sequences A0A0R4J1K1
ENSMUSP00000110645 ENSMUSP00000110645 NP_001157885.1.92730 ENSMUSP00000110645

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]