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Domain assignment for Medtr5g004960.1 from Medicago truncatula

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Medtr5g004960.1
Domain Number 1 Region: 368-602
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 7.47e-77
Family Lesion bypass DNA polymerase (Y-family), catalytic domain 0.0000349
Further Details:      
 
Domain Number 2 Region: 41-170
Classification Level Classification E-value
Superfamily BRCT domain 6.67e-22
Family DNA ligase 0.076
Further Details:      
 
Domain Number 3 Region: 607-720
Classification Level Classification E-value
Superfamily Lesion bypass DNA polymerase (Y-family), little finger domain 6.28e-18
Family Lesion bypass DNA polymerase (Y-family), little finger domain 0.0066
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Medtr5g004960.1
Sequence length 1202
Comment | DNA repair protein REV1 | HC | chr5:222976-208901 | 20130731
Sequence
MSLNSCKRASSSSDANRRKKKQQKTTTTTNQKTLGVAWGKNSSNSTKSPFSDVASYMTEK
NRKLHNQFNTEEASTSCGNPIFAGVSIFVDGFTVPSSQELRGYMLKYGGRFENYFSRHRV
THIICTNLPHTKLKNLRAFSAGLPIVKPTWILDSVASNRLLTWAPYQLHQLSNNQQPKLS
KFFTFTTTKNSEDSLCQVESDIEDSFISAGKSEGRHSSEVGDVVESSRQIITEADDNVSE
NTDAIMMEELLASAGIKCDEEDPVGGSNDAAKDEENIQGELESSCQEPSASVSSLRSVNE
IPTSASTKPSKQCHSTLSDPNFVENYFKNSRLHFIGTWRNRYRKRFPTFSTGFDNEISNI
NASSVYGNSVVIHVDMDCFFVSVVIRSHPELLDKPVAVCHSNNSKGTAEISSANYPARSY
GIKAGMFVRDAKALCPHLVIFPYNFEAYEEVADQFYSTLHRHCNKVQAVSCDEAFLDVTH
SKVEDPELLASSIRKEIYETTGCTASAGIAGNMLMSRIATRTAKPNGQYHITPERVEDHL
SQLPINALPGVGHALQEKLKKQNVQTCGQLMMISKVSLQKDYGMKTGEMLWNYSRGIDTR
LVGEFQECKSIGADVNWGVRFNDMKDCENFLTNLCKEVSLRLQGCGMQGRTFSLKIKKRR
KDADEPAKFMGCGDCENLSHSVTIPVATDNLEVLHRIAKQLFGNFYIDVKEIRGIGLQVS
RLESSKASKQGAEKYNLKSWVTSRSASMDKQKHPMGHDKQNMDGTSIHGCRDLRGSSVEK
DNNIQDNQASADRISTPPPLCHLDVEVIRNLPPEVFSELNEIYGGKLVDYITKGKGISES
SSSLQSSLLEKEATNKEKELLDVDPIPQKKPLSEIEVMQHEAEGGEVVPDLGSGPSCNVN
PKSSFEKDDLLPSSLSQVDGSVLRELPEDLKAVIVLQLPAHRRQDISSNVTLVPPSENHQ
VSLGVKNSENLGSNVLNECLWAGNPPKWVEEFKMSSCLILNKLAEVYYKSGLTSTLSSVL
HQIISEFHLLNLVHQISDDSVNIMCELLKQYIKMKIGKDIEEIYICFRLLKRFAAKSQLF
LQVYNGVFPYLQDGNLVLAWCKYIAPPPDEFKIREREKMKIRYSRTLNTLLMLRTEHLNT
CLVIESGIIIAVTAGKRARGSLGAAGKAAFNTPKWWDPFLDPGYARALVHRAALLQLGRG
SI
Download sequence
Identical sequences A0A072UD16
Medtr5g004960.1 XP_013453295.1.50012

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