SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|21229184|ref|NP_635106.1| from Methanosarcina mazei Go1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|21229184|ref|NP_635106.1|
Domain Number 1 Region: 154-347
Classification Level Classification E-value
Superfamily L domain-like 0.000000085
Family Ngr ectodomain-like 0.055
Further Details:      
 
Weak hits

Sequence:  gi|21229184|ref|NP_635106.1|
Domain Number - Region: 71-109
Classification Level Classification E-value
Superfamily PKD domain 0.00314
Family PKD domain 0.0065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|21229184|ref|NP_635106.1|
Sequence length 393
Comment hypothetical protein MM_3082 [Methanosarcina mazei Go1]
Sequence
MRFINRIPGIKFAGLLAIIILVASTLGCTGSDHDEISSSFIPDAEVMPPSPEANITFVTE
GSSFSPIIKVKGSPEIQWVFGDGSTSGSTSPTVNFGSEKTRVNTLIVTPWSAVTQINIGY
DGSDGGVTPGPGTIEKLKQQNVIAVSGLENVAPSLRVWASSFNPISELDFSNFTELHTVE
CFYCTSLTDIRLRNVPSLTRLCLENCKISYLDLSEAPSLADLRGASQGSSTYEINWGTTG
AHVWHICVRDNPQMTGTFPVSQFPLLKDYFIWNGNQSGSLHLTSKDLKKVLLSSNNYTIV
NFSGCFPAGRKGTVNVCNNKIISLDVSDDPGLLYLDASQNLLDQTAVDGILQELDSYRTR
NGSLDLSGNSAPSSAGIEHAKNLTSRGWEVKIE
Download sequence
Identical sequences Q8PSJ7
192952.MM_3082 gi|21229184|ref|NP_635106.1| WP_011034980.1.49674

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]