SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for NP_001007017.1.100692 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001007017.1.100692
Domain Number 1 Region: 2069-2227
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 1.7e-24
Family Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 0.0082
Further Details:      
 
Domain Number 2 Region: 2537-2594
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 7.59e-16
Family TSP-1 type 1 repeat 0.00029
Further Details:      
 
Domain Number 3 Region: 4248-4298
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000000209
Family TSP-1 type 1 repeat 0.00064
Further Details:      
 
Domain Number 4 Region: 2700-2751
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000068
Family TSP-1 type 1 repeat 0.0006
Further Details:      
 
Domain Number 5 Region: 3997-4054
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000000968
Family TSP-1 type 1 repeat 0.00032
Further Details:      
 
Domain Number 6 Region: 3234-3291
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000116
Family TSP-1 type 1 repeat 0.0004
Further Details:      
 
Domain Number 7 Region: 2966-3023
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000123
Family TSP-1 type 1 repeat 0.00062
Further Details:      
 
Domain Number 8 Region: 2812-2867
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000628
Family TSP-1 type 1 repeat 0.00051
Further Details:      
 
Domain Number 9 Region: 1275-1338
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.000000000017
Family ATI-like 0.041
Further Details:      
 
Domain Number 10 Region: 3806-3857
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000000641
Family TSP-1 type 1 repeat 0.0016
Further Details:      
 
Domain Number 11 Region: 3630-3674
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000017
Family TSP-1 type 1 repeat 0.001
Further Details:      
 
Domain Number 12 Region: 3940-3997
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000432
Family TSP-1 type 1 repeat 0.0012
Further Details:      
 
Domain Number 13 Region: 1567-1604
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000144
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 14 Region: 1420-1457
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000236
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 15 Region: 3456-3504
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000275
Family TSP-1 type 1 repeat 0.001
Further Details:      
 
Domain Number 16 Region: 2484-2537
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000275
Family TSP-1 type 1 repeat 0.003
Further Details:      
 
Domain Number 17 Region: 1699-1749
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000288
Family TSP-1 type 1 repeat 0.0012
Further Details:      
 
Domain Number 18 Region: 3072-3129
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.00000000419
Family ATI-like 0.079
Further Details:      
 
Domain Number 19 Region: 3393-3438
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000051
Family TSP-1 type 1 repeat 0.0011
Further Details:      
 
Domain Number 20 Region: 4759-4808
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000732
Family TSP-1 type 1 repeat 0.0019
Further Details:      
 
Domain Number 21 Region: 3168-3234
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000157
Family TSP-1 type 1 repeat 0.0027
Further Details:      
 
Domain Number 22 Region: 2447-2483
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000209
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 23 Region: 1380-1416
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000236
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 24 Region: 1457-1492
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000249
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 25 Region: 468-528
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000000294
Family BSTI 0.07
Further Details:      
 
Domain Number 26 Region: 4812-4870
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000000314
Family BSTI 0.048
Further Details:      
 
Domain Number 27 Region: 1494-1533
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000393
Family LDL receptor-like module 0.0022
Further Details:      
 
Domain Number 28 Region: 825-885
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000000563
Family ATI-like 0.036
Further Details:      
 
Domain Number 29 Region: 2387-2426
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000668
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 30 Region: 2906-2985
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000126
Family VWC domain 0.034
Further Details:      
 
Domain Number 31 Region: 2233-2270
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000126
Family LDL receptor-like module 0.0018
Further Details:      
 
Domain Number 32 Region: 1814-1874
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.000000131
Family BSTI 0.067
Further Details:      
 
Domain Number 33 Region: 4054-4113
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.000000229
Family ATI-like 0.071
Further Details:      
 
Domain Number 34 Region: 1754-1793
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000235
Family TSP-1 type 1 repeat 0.0013
Further Details:      
 
Domain Number 35 Region: 4605-4658
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000249
Family TSP-1 type 1 repeat 0.0015
Further Details:      
 
Domain Number 36 Region: 4152-4207
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000405
Family TSP-1 type 1 repeat 0.0016
Further Details:      
 
Domain Number 37 Region: 4970-5038
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000513
Family VWC domain 0.051
Further Details:      
 
Domain Number 38 Region: 4918-4980
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.00000115
Family ATI-like 0.034
Further Details:      
 
Domain Number 39 Region: 3301-3352
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.00000213
Family BSTI 0.041
Further Details:      
 
Domain Number 40 Region: 1607-1644
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000236
Family LDL receptor-like module 0.0024
Further Details:      
 
Domain Number 41 Region: 3877-3924
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000379
Family TSP-1 type 1 repeat 0.0014
Further Details:      
 
Domain Number 42 Region: 979-1020
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000398
Family VWC domain 0.05
Further Details:      
 
Domain Number 43 Region: 2617-2662
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.00000425
Family ATI-like 0.036
Further Details:      
 
Domain Number 44 Region: 2759-2807
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000497
Family TSP-1 type 1 repeat 0.0017
Further Details:      
 
Domain Number 45 Region: 4671-4721
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.00000536
Family BSTI 0.084
Further Details:      
 
Domain Number 46 Region: 3028-3067
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000131
Family TSP-1 type 1 repeat 0.0036
Further Details:      
 
Domain Number 47 Region: 2867-2932
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000131
Family ATI-like 0.063
Further Details:      
 
Domain Number 48 Region: 4311-4361
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000157
Family TSP-1 type 1 repeat 0.0033
Further Details:      
 
Domain Number 49 Region: 4360-4417
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000183
Family TSP-1 type 1 repeat 0.0058
Further Details:      
 
Domain Number 50 Region: 3513-3570
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000491
Family ATI-like 0.048
Further Details:      
 
Domain Number 51 Region: 4421-4479
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000638
Family ATI-like 0.011
Further Details:      
 
Domain Number 52 Region: 1659-1685
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000759
Family LDL receptor-like module 0.003
Further Details:      
 
Domain Number 53 Region: 4205-4266
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000806
Family Fibronectin type I module 0.077
Further Details:      
 
Domain Number 54 Region: 3680-3738
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000994
Family BSTI 0.037
Further Details:      
 
Domain Number 55 Region: 1911-1969
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000994
Family TSP-1 type 1 repeat 0.0016
Further Details:      
 
Weak hits

Sequence:  NP_001007017.1.100692
Domain Number - Region: 875-944
Classification Level Classification E-value
Superfamily FnI-like domain 0.000136
Family Fibronectin type I module 0.038
Further Details:      
 
Domain Number - Region: 527-567
Classification Level Classification E-value
Superfamily FnI-like domain 0.000366
Family VWC domain 0.071
Further Details:      
 
Domain Number - Region: 1967-2029
Classification Level Classification E-value
Superfamily FnI-like domain 0.00126
Family Fibronectin type I module 0.063
Further Details:      
 
Domain Number - Region: 5045-5134
Classification Level Classification E-value
Superfamily Cystine-knot cytokines 0.00421
Family Gonadodropin/Follitropin 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001007017.1.100692
Sequence length 5141
Comment SCO-spondin precursor [Rattus norvegicus]; AA=GCF_000001895.5; RF=representative genome; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=mixed; AL=Chromosome; RT=Major
Sequence
MLLPALLFGMLWAPANGHWCEQIETVHVEEEVTPRREDLVPCTSLYHYSRLGWKLDLSWG
GHVGLTRPPALGLCAIYKPPETRPATWNRTVRACCPGWGGIHCTEALAEASPKGHCFVTW
HCQPLAGSANSSAGSLEECCAQPWGHSWWNSSSQMCLSCSGQHRPGNASSEGLLQPLAGA
VGQLWSQRQRPSATCATWSGFHYQTFDGQHYHFLGQCTYLLAGAMDSTWAVHLRPSVHCP
QPRQCWLVQVIMGPEEVLIQDGEVSVKGQPVPVGESQLLHGMSLQWQGDWLVLSGGLGVV
VRLDRSSSIIISVDHEFWGRTQGLCGLYNGRPEDDFVEPGGGLAMLAATFGNSWRLPGYE
PGCLDTVEVARGCEGLLEGTLTGLEAGKLQAQAQDLCHQLLEDPFSQCHGQVPPDEYHET
CLFAYCVGATAGSGPEEQVKAVCATFANYAQACARQHIYVHWRKPGFCERLCPGGQLYSD
CISSCPPSCSAVAQGEEGSCGKECVSGCECPTGLFWDGALCVPAAHCPCYYRRQRYAPGD
TVKQQCNPCVCQDGRWHCAQAPCPAECAVGGDGHYCTFDGRSFSFRGNPGCQYSLVQDSV
KGQLLVVLEHGACETGSCLHALSAFLGKTHIQLRYSGAVLVDGQDVDLPWIGAEGFNVSH
ASSTFLLLRWPGAWVLWGVADPAVYITLDPRHAYQVQGLCGTFTWKQQDDFLTPAGDIET
SVTAFASKFQVSGDGRCPLVDNTPLSSCSTYSQRLAFAEAACAALHGHAFQECHGLVERE
PFRLRCLESMCSCAPGRDCLCSVLSAYAHHCAQEGVLLQWRNETLCSVPCPGGQVYQECA
PACGHYCGEPEDCKELGSCVAGCNCPPGLLWDLEGQCVPPSMCPCQLGGHRYAFNTTTTL
KDCSHCICQERGLWNCIAHHCPRQWALCPQELIYAPGACLLTCDSLGANHSCLAGSTDGC
VCPSGTVLLDKHCVSPDLCPCRHNGQWYPPNATIQEDCNICVCQNQRWHCTGQRCSGWCQ
ASGAPHYVTFDGLVFTFPGACEYLLVREAGGRFSVSIQNLPCGASGLTCTKALAVRLDST
VVHMLRGQAVTVNGVSIKLPKVYTGPGLSLHHAGLFLLLTTRLGLTLLWDGGTRVLVQLS
PHFHGRVTGLCGNFDGDVSNDLRSRQGVLEPTAELTAHSWRLNPLCPEPGDLPHPCSVNA
HRVNWARAHCEVILQPIFAPCHTEVPPQQYYEWCVYDACGCDTGGDCECLCSAIATYADE
CARHRHHVRWRSQELCPLQCEGGQVYEPCGSTCPPTCHDHHPELRWHCQAITCVEGCFCP
EGTLLHGGTCVELTDCPCEWQGSFFPPGAVLQKDCGNCTCQESQWHCNPSGAPCEEMEPG
CAEGEALCRESGHCVPLEWLCDNQDDCGDGSDEEGCDTSVCGEGQMSCQSGRCLPLSLIC
DGQDDCGDGTDEQGCLCPQGFLACADGRCLPPALLCDGHPDCLDAADEESCLGWVSCTSG
EVSCVDGPCIRTIQLCDGVWDCPDGADEGPVHCSSPSLPTPPAGIGQNPSTSSPDTSPSP
VGSASPASPCSLSEFQCNSGECTPRGWRCDREEDCTDGSDELDCGGPCKLYQMPCAHGPH
CLSPGQLCDGVAQCPDGSDEDPDVCEERSASGGPNGTAVPCPEFSCPNGTCIDFLLVCDG
SPDCELADETEPSLDEQGCGTWGSWGPWEPCSQTCGPGIQSRNRNCSISSLHVLQNCPGL
QHQSQSCFTEACPVDGEWSSWSLWSPCSEPCGGTMTRHRQCRPPQNGGQDCALLPGSTHS
THQTSPCPQEGCLNVTCFGELVFRPCAPCPLTCDDISGEAVCSPDRPCSSPGCWCPEGKV
LGTEGRCVRPRQCPCLVDGIRYWPGQRIKMDCQLCFCQDGQPHRCRPNPECAVDCGWSSW
SPWAECLGPCSSQSLQWSFRSPNNPRLSGHGRQCRGIHRKARRCQTEPCEGCEQWGLTYH
VGERWRGGPCTVCECLHRSITRCSPYCPIGSCPQSWVLVEGMGESCCHCALPGKNQTMIP
VTTPAPVPTPSPQIGASLVTYVLPPMSDACYSPLGLAGLPTWAPSQPLEHSTRAAPVEAP
TAGPGPREDAYAEWHTQPLYLQLDLLWPRNLTGIMVQRAGSSAAYISNLSLQFSSDGLQW
HSVLNSLSSTLPPPKPSPESSNHMVPEVWTFDQMVQARYIRVWPHGSHLRDNNQQDIFLW
VELLGCKPVPPLAPLCPGTRHRCANGDCALKGGPCDGAVDCEDGSDEEGCGPLRASTASR
VHSTARTPALSPTQPGKFPFHPREGLADMEHQQPKQESPMPSAGVSPSASEGLLPVSGQS
MQTLTTTSTFPPGLKSLHPGMAAVTVHSPHSVMPGTPVGQSVSPRPFPLMRCGPGQVPCD
VLGCVEQEQLCDGREDCLDGSDEQHCASPEPFTVPTTALPGLPASRALCSPSQLSCGSGE
CLPLEHRCDLQVNCQDGSDEDDCVDCVLAPWSGWSDCSRSCGLGLIFQHRELLRPPLPGG
SCLLDQLRSQPCFVQACPVAGAWAKWGPWEPCSVSCGGGHQSRQRSCVDPPPKNGGAPCP
GPSHEKVLCNLQLCPGDTDCEPGRVHVNAELCQKGLLPPCPPSCLDPEANRSCSGHCVEG
CRCPPGLFLQDSHCLPLSECPCLVGQKLMQPGLAFLLDNCSQCICESGILLCKPAACSQS
CGWSAWSPWTACDHSCGSGVRARFRSPTNPPAAFGGSPCEGDRQELQACYTDCGTDIPGW
TPWTSWSSCSQSCLVPGGDPGRRQRSRLCPSSRDTFCPGEATQEEPCSPSLCPVPSAWGL
WASWSACSASCNGGIQTRGRSCSGSAPGNPVCLGPHTQTRDCNVHPCTAQCPGNMVFRSA
EKCLEEGGPCPQLCLAQDPGVECTGSCAPGCSCPPGLFLHNASCLPRSQCPCQLHGQLYA
PGAVARLDCNNCTCSSGEMVCTSERCPVACGWSPWTPWSPCSQSCNVGIRRRFRAGTAPP
AAFGGAECRGPNLDAEFCTLRPCQGPGAAWSSWTPCSVPCGGGYRNRTQGSGRHSPVEFS
TCSLQPCAGPVPGVCPKDQQWLDCAQGPASCAHLSTPREANQTCHPGCYCLSGMLLLNNV
CVPAQDCPCAHRGRLHSPGSAVILPCENCSCVSGLITNCSSWPCEEGQPAWSSWTPWSVC
SASCSPARRHRRRFCVRPSTTAPFSLDLPTTVAAPTMLCPGPEAEEEPCLLPGCNQAGVW
GPWSPWSGCSRSCGGGLRSRTRACDKPPPQGLGDFCEGPQAQGEACQAQPCPVANCSTIE
GAEYSPCGPPCPRSCDDLVHCMWHCQPGCYCPPGKVLSADGAICVQPHHCSCLDLLTGKR
HHPGSQLMRPDGCNHCTCMEGRLNCTDLPCQVSGDWCPWSEWTACSQPCRGQTRTRSRAC
VCPAPQHGGAPCPEEAGETGVQHQMEACPNPTACPVDGAWSPWGSWSPCDACLGQSYRSR
MCSHPPPSDGGTPCLGGHQQSRPCRNSSTPCTDCGGGQDLLPCGQPCPHSCQDLSLGSTC
QPGSSGCQSGCGCPPGQLSQDGLCVFPADCHCHFQPKAMGIPENQSRSVGSALSSWESLE
PGEVVTGPCDNCTCVAGVLQCHEVPSCPGPGIWSSWGPWEKCSVPCGGGEQLRSRQCARP
PCPGLAQQSRTCHIHVCRETGCPAGRLYRECQPSEGCPFSCAHVTGQVACFSESCEEGCH
CPEGTFQHHSACVQECPCVLTVSLLQELGVASTALRSYPVLLGDEGQPLGPGDELDPGQM
LQTVCGNCSCVHGKLSCSMEECSRVRGYFGPWGMWSLCSHSCGGLGTRTRTRQCVLPTLA
PAGLSCRGPLQDLEYCFSPECPGTAGSTVEPVTGLAGGWGPWSPWSPCSHSCTDLTHPAW
RSRTRLCLANCTVGDSSQERPCNLPSCTTLPLCPGPGCGSENCFWTSWAPWEPCSRSCGV
GQQRRLRAYHPPGPGGHWCPDILTAYQERRFCNLRACPVPGGWSHWSPWSWCDRSCGGGR
SLRSRSCSSPPPKNGGASCVGERHHVRSCNPMPCEKDCPAGMEMVSCANRCPYSCSDLQE
AVMCQEDQACQLGCRCSEGFLEQDGGCVPVGHCECTDAQGRSWAPGSQHQDACNNCSCQA
GQLSCTAQPCPPPAHCAWSHWSAWSACSHSCGPHGQQSRFRSSTSGSWALECQKEQSQSQ
PCPEDPCPPLCLHEAHLHVLGDNWLHGECQQCSCTPEGVICKDTDCAVPGGWTLWSSWSY
CSVSCGGGSQVRTRSCMVSAPQHGSPSCQGPDTQTQHCGQQLCLQLLEICSWGPWGPCSR
SCGTGLASRSGSCPCLLTKEDSECNDTFSGLDTQACYPGPCQEDCMWSDWSSWTRCSCKI
LVQQRYRHQVPAPGQAGEGTLCTGLDGHFRPCAIGNCSEDSCLPPFEFQSCGSPCAGLCA
THLSHQLCQDLPPCQPGCYCPMGLLEQDGGCILPEQCNCWHTSGEGARVTLAPGHRLQLG
CKECVCQSGELQCSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPDSRTALEVHWPLNTSV
TLLASEQYRHRLCLDPETGRPWAGDPALCTVPLSQQRLCSDPGACHDTCQWGPWGPWSPC
QVPCSGGFKLRWREASDNSVGECRGPWAQTESCNMGSCPGESCETRDTVFTLDCANQCPR
SCADLWEGVQCLQGPCSPGCRCPPGQLVQDGHCVPISSCRCGLPSANASWELAPTQVVQL
DCHNCTCINGTLMCPYPECPVLGPWSPWSECSAVCGGGTMVRYRSCEEHPDSAPCQALDM
EQRVECNLQTCPECPPGQVLSTCATLCPSFCSHLWPGTICVREPCQLGCGCPGGQLLHSG
TCIPPEACPCTRLSLPWGLTLPLEEQAQELPSGTVLTWNCTHCTCQGGVFTCSHTDCQEC
PPGEILQLGELRPCEKTCLEMNKTQAWSNCTEAQVPGCVCQLGHFRSHTGLCVPEDHCEC
WHHGSPHLPGSEWQEACESCRCLHGKSVCTQHCPELSCAQGEVVVQEPGSCCPICQQDTL
EEEPVSCRHLTELRNLTKGPCHLDQVEVSYCSGHCRSSTNVMTEEPYLQSQCDCCSYRLD
PDSPVRILNLLCPDGRTEPVLLPVIHNCHCSACQGGEFSKH
Download sequence
Identical sequences Q700K0
ENSRNOP00000037189 NP_001007017.1.100692 NP_001007017.1.4139 ENSRNOP00000037189 10116.ENSRNOP00000037189

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