SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001008366.1.100692 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001008366.1.100692
Domain Number 1 Region: 2-153
Classification Level Classification E-value
Superfamily ENTH/VHS domain 3.53e-52
Family VHS domain 0.000000121
Further Details:      
 
Domain Number 2 Region: 150-303
Classification Level Classification E-value
Superfamily GAT-like domain 4.19e-33
Family GAT domain 0.00000627
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001008366.1.100692
Sequence length 492
Comment target of Myb protein 1 [Rattus norvegicus]; AA=GCF_000001895.5; RF=representative genome; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=mixed; AL=Chromosome; RT=Major
Sequence
MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVG
NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVENVLVRTILPKNNPPTIVHDKVLNL
IQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNP
VVSNSSHRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVNGNVRVMSEMLTE
LVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQLTEELLMINDNLNNVFLRHER
FERFRTGQTAKASGEAELAADLIDMGPDPAATSNLSSQLAGVDLGSSRVRAGLQSLEASG
HLEDDFDMFALTRGSSLADQRKGVKYEAPQTTDGLAGALDARQQSTGAIPATQARIMEDI
EQWLSTDVGSSAEEPSGVTSEEFDKFLEERAKAADRLPNLASPSAEGPPRPCPGAAPRRK
TQEKDDDVLFAL
Download sequence
Identical sequences Q5XI21
ENSRNOP00000018880 NP_001008366.1.100692 NP_001008366.1.4139

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]