SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001014883.1.76553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001014883.1.76553
Domain Number 1 Region: 213-431
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 2.1e-63
Family Nuclear receptor ligand-binding domain 0.00000000158
Further Details:      
 
Domain Number 2 Region: 80-169
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 9.99e-26
Family Nuclear receptor 0.00011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001014883.1.76553
Sequence length 498
Comment oxysterols receptor LXR-beta [Bos taurus]; AA=GCF_000003055.6; RF=representative genome; TAX=9913; STAX=9913; NAME=Bos taurus; breed=Hereford; AL=Chromosome; RT=Minor
Sequence
MSTPTTNSVDTPLPGNGPSTPSSSPGGKEDGPEPCPGGADPDVPSTDGADSASVVVILDT
AEEPERKRKKGPAPKMLGDELCQVCGDTASGFHYNVLSCEGCKGFFRRSVIRGGAGRYAC
RGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSKEQIRKKKIRKQQQQQQQQSSPTG
PGVSSSSPASGPGASPGGSDGGGQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQ
PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA
STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD
DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVDALLSYTRIKRPQDQLRFPRMLMKLV
SLRTLSSVHSEQSSPCGSRTRSCHLCCLRSGTSTSEGPAPPPCTPPMTGHWGRKGLGRVW
APALRLGAKALAPRQSSR
Download sequence
Identical sequences Q58CP4
NP_001014883.1.59421 NP_001014883.1.76553

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]