SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001071372.1.76553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001071372.1.76553
Domain Number 1 Region: 180-194,283-323,382-595
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 1.7e-59
Family Nuclear receptor ligand-binding domain 0.0000938
Further Details:      
 
Domain Number 2 Region: 112-193
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 4.99e-29
Family Nuclear receptor 0.000087
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001071372.1.76553
Sequence length 608
Comment nuclear receptor subfamily 2 group C member 1 [Bos taurus]; AA=GCF_000003055.6; RF=representative genome; TAX=9913; STAX=9913; NAME=Bos taurus; breed=Hereford; AL=Chromosome; RT=Minor
Sequence
MASIEEIAHQIIEQQMGEIVTEQPTGQKIQIVTALDHNTQGKQFILTNHDGSTPNKVILA
RQDSTPGKVFFTTPDAAGVNQLFFTTPDLSTQQLQFLTDNSSSEQGPNKVFDLCVVCGDK
ASGRHYGEVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMK
QDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDSETARSAGLLDSG
MFVNIHQSGIKTESTMLMTPDKAVSCQGDLSTLASVVTSLANLGKTKDPAPNSNEVSMIE
SLSNGDTSYTSVCEFHQEMQTNGDVSRAFDTLAKALNPGESTACQSSGEGMEGNVHLIAG
DSSINYIEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQ
ALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLL
MEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDY
ITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKMEPADYN
SQIIGHSI
Download sequence
Identical sequences A0JNE3
NP_001071372.1.59421 NP_001071372.1.76553

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]