SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001099728.1.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001099728.1.4139
Domain Number 1 Region: 284-478
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 7.59e-48
Family Ypt/Rab-GAP domain of gyp1p 0.0034
Further Details:      
 
Domain Number 2 Region: 457-578
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 6.28e-32
Family Ypt/Rab-GAP domain of gyp1p 0.0043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001099728.1.4139
Sequence length 646
Comment TBC1 domain family member 17 [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MEGSSYRVVFEKGGVYLHTSARKHQDPDSLIAGVLRVVEKDNDVLLHWAPVEEAGDPTQI
FFSKKDPSGGEPSTSEEEPTFDPGYEPDWAVISTVRPRPHLAEPRRGAEPSSPRSSWAFS
VSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQD
SRLYLVFPQDPSALSDSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQP
HPEGASSPDLPPLPDDEPEPGFEVISCVELGQRPTVERAPPVTEEEWNRHVGPEGRLQNV
PELKSRIFSGGLSPGLRREAWKFLLGYLSWESSAEEHKAHVRKKTDEYFRMKLQWKSVSA
EQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQG
MSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDQPLCD
FLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERD
TLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALYRQLTACPELPHNVQEILGLAQPEE
PSSPSPPVSPMPLSPTRAPMPPPPPEEVAPQPDSSLEILPEDEDGA
Download sequence
Identical sequences B1H264
NP_001099728.1.100692 NP_001099728.1.4139 ENSRNOP00000027436 10116.ENSRNOP00000027436 ENSRNOP00000027436

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]