SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001107898.1.45394 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001107898.1.45394
Domain Number 1 Region: 396-758
Classification Level Classification E-value
Superfamily Hect, E3 ligase catalytic domain 9.42e-129
Family Hect, E3 ligase catalytic domain 0.00000000335
Further Details:      
 
Domain Number 2 Region: 12-137
Classification Level Classification E-value
Superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 1.31e-23
Family PLC-like (P variant) 0.048
Further Details:      
 
Domain Number 3 Region: 291-331
Classification Level Classification E-value
Superfamily WW domain 0.000000000000482
Family WW domain 0.00072
Further Details:      
 
Domain Number 4 Region: 153-192
Classification Level Classification E-value
Superfamily WW domain 0.000000000046
Family WW domain 0.001
Further Details:      
 
Domain Number 5 Region: 245-286
Classification Level Classification E-value
Superfamily WW domain 0.000000000264
Family WW domain 0.0031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001107898.1.45394
Sequence length 765
Comment E3 ubiquitin-protein ligase SMURF2 [Danio rerio]; AA=GCF_000002035.6; RF=reference genome; TAX=7955; STAX=7955; NAME=Danio rerio; AL=Chromosome; RT=Major
Sequence
MSNQGVRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNSINRLKDTGYQRLDLNKL
GPNDSDTVRGQIVVSLQSRDRIGSGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RSTQWERPTRPASEYSSPGRPLSCLVDENTPIMTPNGAAGVPADDPRVQERRVRSQRHRN
YMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEELGPLP
PGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSPNGSRAAVEAQSSSRPGQL
KEQAQSVVSPGNLPEDPECLTVPKYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIF
EESYRQVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDD
IYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLDDME
SVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTQDTKKEYVR
LYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKIDINDWKSNTRL
KHCTPDSNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQI
DASTNNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEETCGFAVE
Download sequence
Identical sequences A9JRZ0
NP_001107898.1.45394 ENSDARP00000055490 ENSDARP00000055490 7955.ENSDARP00000055490

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]