SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001135586.1.99540 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001135586.1.99540
Domain Number 1 Region: 435-478,510-772
Classification Level Classification E-value
Superfamily WD40 repeat-like 2.86e-78
Family WD40-repeat 0.0000857
Further Details:      
 
Domain Number 2 Region: 173-320
Classification Level Classification E-value
Superfamily Taf5 N-terminal domain-like 3.53e-47
Family Taf5 N-terminal domain-like 0.000000108
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001135586.1.99540
Sequence length 777
Comment transcription initiation factor TFIID subunit 5 [Xenopus tropicalis]; AA=GCF_000004195.3; RF=representative genome; TAX=8364; STAX=8364; NAME=Xenopus tropicalis; strain=Nigerian; AL=Chromosome; RT=Major
Sequence
MAAVPDEASVVVKAEPEVQDEAKPDISGCVDGNAQALGNGAPPSPSSPQAAPPVPPGVAA
PPAAAAPAPGSDASDRQTLLAVLQYLKKRKLKDSADILLRESGLFDSDELLALTSLSPDR
AGAGDGADTTLLSRVSGAAGSDISASAGGAASSSASSACAGKVTLNNGPQDQPDVSAVLS
AYTQQGDPALYEEYYSGLKRFIESVLDCHRAELSQLFYPLFVHMYLELVYNQHEQKAKSF
FEKFHGDQECYYEDDLRILASLSKKGHMMGNETILDFRTSKFVLRISRDSYQLLKRHLQE
RQNNQIWSIVQEHLYIDIFDGMPRSKQQIDAMVGSLSGEAKREANKAKIFFGLLKEPEIE
VPLDDEDEEVENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMI
MKETAKRVRLGQDSLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSLTPKK
LRSVKSASDLSIIDKESDDVLERIMDEKSSSEMKVLYGHSGPVYATSFSPDRNYLLSSSE
DGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIF
AGHLADVICTRFHPNSNYIATGSTDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFTPNGKF
LATGASDGRVLLWDIGHGLMVGELKGHTNTVYALRFSRDGEILSSVSMDNTVRLWDTVKA
FEDLDTDDFTSSAGHINFHENSQDLLLGTFMTKSTPVIHLHFTRRNLLLAAGAYTPQ
Download sequence
Identical sequences B4F725
gi|195539684|gb|AAI68104| gi|213982837|ref|NP_001135586| NP_001135586.1.99540

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]