SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001158796.1.97760 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001158796.1.97760
Domain Number 1 Region: 129-373
Classification Level Classification E-value
Superfamily vWA-like 4.45e-80
Family Integrin A (or I) domain 0.000000266
Further Details:      
 
Domain Number 2 Region: 375-458
Classification Level Classification E-value
Superfamily Integrin domains 3.77e-20
Family Integrin domains 0.0016
Further Details:      
 
Domain Number 3 Region: 625-704
Classification Level Classification E-value
Superfamily Integrin beta tail domain 0.00000000000051
Family Integrin beta tail domain 0.0028
Further Details:      
 
Domain Number 4 Region: 23-80
Classification Level Classification E-value
Superfamily Plexin repeat 0.00000000000785
Family Plexin repeat 0.003
Further Details:      
 
Domain Number 5 Region: 583-622
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000112
Family Integrin beta EGF-like domains 0.011
Further Details:      
 
Domain Number 6 Region: 541-579
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000865
Family Integrin beta EGF-like domains 0.0072
Further Details:      
 
Weak hits

Sequence:  NP_001158796.1.97760
Domain Number - Region: 504-542
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00586
Family Integrin beta EGF-like domains 0.019
Further Details:      
 
Domain Number - Region: 464-492
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00781
Family Integrin beta EGF-like domains 0.062
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001158796.1.97760
Sequence length 777
Comment Integrin beta-2 precursor [Salmo salar]; AA=GCF_000233375.1; RF=representative genome; TAX=8030; STAX=8030; NAME=Salmo salar; breed=double haploid; AL=Chromosome; RT=Major
Sequence
MYKCVSLLLLLTGRGVLSQEVEVCSKTVINSCSDCIRSGAYCTWCKQLNFTNPGEQEAAR
CDTRAQLEKRGCMEKDIISPQNTLIVTKNTPLSTNAFVKDEPIQLRPQEVNLKLRPGLPR
TFRLDFRRVEGYPVDLYYLMDLSYSMEDDLRSIKTLGNELFKALQGITKQGRIGFGSFVD
KTVLPFTNTNPEKLKKPCADKEQFCQPAFGYRHVLSMTENKADFNREVDKQRISGNLDSP
EGTLDAIMQAAVCGDRIGWRNSSTRLIVLSTDDGFHMAGDGKLAGILEPNDERCYMDNQL
YSKSNDMDYPSVGQVASQLEKNNIQPIFAVTKSMENVYRELSRMIPKSEVGVLSEDSKNV
VELIQAAYNRLSSKVTVTHDALPDNVRVTYTPLCPGGGPAGDKGVCDNVKVGTLVSFNVT
VTADECIDREVSFLIGPLGIKDKMKVSLSTRCECECDDPKEKDHMYCNKKGKVNCGMCSC
KAGFVGQRCECSIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCYALQGGSTYYGTHC
ECENESCEKFQNKLCGGNGKCRCKNCDCSPEYEGTACQCKKSDEQCRTPSGSVCSGRGTC
QCNQCKCMEGYQRPYCLTCPACQTPCITKGKCIECLGFATGPFSKNCSQTCKSINDFEIV
ETLPPGKPCDVRDVENCRVFFTIKQLDGEDNYSAQILKTRECPELPNIYAIIGGAIAAVA
LIGLVILLIIKGFLYWRDVKEFRRFENEKKKEKWTPGDNPLFMNATTTVANPTFTGE
Download sequence
Identical sequences C0H8X0
NP_001158796.1.97760

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]