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Domain assignment for NP_001177874.1.87134 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001177874.1.87134
Domain Number 1 Region: 266-413
Classification Level Classification E-value
Superfamily TRAF domain-like 9.97e-47
Family MATH domain 0.00000126
Further Details:      
 
Weak hits

Sequence:  NP_001177874.1.87134
Domain Number - Region: 86-110
Classification Level Classification E-value
Superfamily TRAF domain-like 0.0118
Family SIAH, seven in absentia homolog 0.01
Further Details:      
 
Domain Number - Region: 227-262
Classification Level Classification E-value
Superfamily Trimerization domain of TRAF 0.0863
Family Trimerization domain of TRAF 0.0052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001177874.1.87134
Sequence length 416
Comment TNF receptor-associated factor 1 isoform a [Homo sapiens]; AA=GCF_000306695.2; RF=na; TAX=9606; STAX=9606; NAME=Homo sapiens; AL=Chromosome; RT=Major
Sequence
MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE
DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL
GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH
FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ
QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK
YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID
AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST
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Identical sequences Q13077
gi|300193045|ref|NP_001177874.1| gi|5032193|ref|NP_005649.1| HR3069 NP_001177874.1.87134 NP_001177874.1.92137 NP_005649.1.87134 NP_005649.1.92137 ENSP00000362994 ENSP00000362994 ENSP00000443183 9606.ENSP00000362994 ENSP00000362994 ENSP00000443183

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