SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001179700.1.76553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001179700.1.76553
Domain Number 1 Region: 15-158
Classification Level Classification E-value
Superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 2.81e-28
Family Synaptotagmin-like (S variant) 0.019
Further Details:      
 
Domain Number 2 Region: 468-500
Classification Level Classification E-value
Superfamily Eferin C-derminal domain-like 0.00000000000458
Family Eferin C-derminal domain-like 0.00036
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_001179700.1.76553
Sequence length 511
Comment rab11 family-interacting protein 2 [Bos taurus]; AA=GCF_000003055.6; RF=representative genome; TAX=9913; STAX=9913; NAME=Bos taurus; breed=Hereford; AL=Chromosome; RT=Minor
Sequence
MMLSEQAQKWFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEKYSTSVAEKTLEPVW
KEEASFELPGLLMQGNPEKYILFLIVMHRSLVGLDKFLGQVAINLNDIFEDKQRRKTEWF
RLESKQGKRAKNRGEIKVNIQFMRNNMTASMFDLSMKDKTRSPFAKLKDKMKGRKTDGTF
SDTSSAIIPSSHMPDAHTEFSSSEIQMKSKPKKPFLLGPQRLSSAHSMSDLTGAHVCSEK
LKSGAVAQTHLLGRQIDSFGAVPESGSLKSPHRRTLSFDTSKMNQPDSSVDAGESAFGRQ
NDPFTNVTASLPQKFATLPRKKNPFEESSESWDSSVNLFSKSIEVRKENKREKREKVSLF
ERVTGKKDRRSDKLNNGGADSPCDLKSPNAFSEHRQDYFDYESTNPFTTKFRASNIMPSS
SFHVNPTSHEDLRKIPESNPFDATAGYRSLTYEEVLQELVKHKELLRRKDSHIRELEDYI
DNLLVRVMEETPSILRVPYEPSRKAGKFSNT
Download sequence
Identical sequences G3X6N7
ENSBTAP00000009814 NP_001179700.1.59421 NP_001179700.1.76553 XP_005902846.1.15283 XP_010857576.1.44457 XP_010857577.1.44457 ENSBTAP00000009814 9913.ENSBTAP00000009814

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]